PBANKA_1331800 | derlin-1, putative

_IDPredictionOTHERSPmTPCS_Position
PBANKA_1331800OTHER0.9998630.0001050.000032
No Results

  • Fasta :-

    >PBANKA_1331800 MVQLGELLSNIPLITRVYLILSSILMVLCSLDIISPLSLYLNWNLVLNEHQYWRLITCFL YFGSFGLHFFWDIYVLIYYCSSLEDVTFRNNSADFLWMIIVSCFMLLMVSYLFGGIYFYS SCIINVITYVWSKNNSSTRLTIFFFTIKASYLPWVLTILSLIVDYNSSDNFFGILVGHIY FFFTSVFPLMPIAKNTQIFKTPYLLKWMLRQEGNMAA
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_1331800.fa Sequence name : PBANKA_1331800 Sequence length : 217 VALUES OF COMPUTED PARAMETERS Coef20 : 4.161 CoefTot : -0.784 ChDiff : 0 ZoneTo : 71 KR : 2 DE : 3 CleavSite : 64 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.459 2.341 0.464 0.817 MesoH : 1.047 1.212 0.063 0.523 MuHd_075 : 25.669 22.278 7.636 5.888 MuHd_095 : 18.517 18.743 5.668 5.318 MuHd_100 : 24.309 21.341 7.089 6.927 MuHd_105 : 33.030 23.918 8.456 7.788 Hmax_075 : 7.000 13.400 -0.241 7.460 Hmax_095 : 14.087 27.037 1.704 7.341 Hmax_100 : 20.600 29.100 4.297 7.290 Hmax_105 : 17.300 29.983 3.659 7.677 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9772 0.0228 DFMC : 0.9596 0.0404
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 217 PBANKA_1331800 MVQLGELLSNIPLITRVYLILSSILMVLCSLDIISPLSLYLNWNLVLNEHQYWRLITCFLYFGSFGLHFFWDIYVLIYYC 80 SSLEDVTFRNNSADFLWMIIVSCFMLLMVSYLFGGIYFYSSCIINVITYVWSKNNSSTRLTIFFFTIKASYLPWVLTILS 160 LIVDYNSSDNFFGILVGHIYFFFTSVFPLMPIAKNTQIFKTPYLLKWMLRQEGNMAA 240 ................................................................................ 80 ................................................................................ 160 ......................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_1331800 16 NIPLITR|VY 0.059 . PBANKA_1331800 54 NEHQYWR|LI 0.087 . PBANKA_1331800 89 LEDVTFR|NN 0.102 . PBANKA_1331800 133 ITYVWSK|NN 0.065 . PBANKA_1331800 139 KNNSSTR|LT 0.102 . PBANKA_1331800 148 IFFFTIK|AS 0.053 . PBANKA_1331800 194 PLMPIAK|NT 0.062 . PBANKA_1331800 200 KNTQIFK|TP 0.056 . PBANKA_1331800 206 KTPYLLK|WM 0.064 . PBANKA_1331800 210 LLKWMLR|QE 0.091 . ____________________________^_________________

  • Fasta :-

    >PBANKA_1331800 ATGGTTCAACTTGGTGAGCTATTAAGTAACATTCCGCTAATAACTCGAGTATATCTTATT CTTTCTTCAATTTTGATGGTTTTATGCTCTCTTGATATAATATCACCATTAAGTTTGTAT TTGAATTGGAACTTAGTATTGAACGAACACCAGTATTGGAGATTAATTACGTGCTTTTTG TACTTTGGGTCTTTTGGACTACATTTTTTTTGGGATATCTATGTATTAATATATTATTGC AGCTCCCTTGAAGATGTGACATTTCGAAACAATTCAGCTGACTTTTTGTGGATGATAATA GTGTCATGTTTCATGCTATTGATGGTTTCATACTTATTTGGAGGAATATACTTCTATAGT AGTTGTATTATAAACGTGATCACGTATGTGTGGAGCAAGAACAATTCTTCTACAAGATTG ACTATATTTTTTTTTACGATAAAAGCTTCTTATCTTCCATGGGTTCTGACAATCTTATCT CTTATCGTGGATTACAACTCAAGTGATAATTTTTTTGGGATATTAGTTGGGCACATTTAT TTCTTTTTTACTAGCGTTTTTCCCCTTATGCCCATCGCAAAAAACACGCAAATTTTTAAG ACTCCTTACCTTCTGAAATGGATGTTAAGACAAGAAGGAAATATGGCAGCATAG
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  • Fasta :-

    MVQLGELLSNIPLITRVYLILSSILMVLCSLDIISPLSLYLNWNLVLNEHQYWRLITCFL YFGSFGLHFFWDIYVLIYYCSSLEDVTFRNNSADFLWMIIVSCFMLLMVSYLFGGIYFYS SCIINVITYVWSKNNSSTRLTIFFFTIKASYLPWVLTILSLIVDYNSSDNFFGILVGHIY FFFTSVFPLMPIAKNTQIFKTPYLLKWMLRQEGNMAA

    No Results
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PBANKA_133180      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India