PBANKA_1334100 | proteasome subunit beta type-2, putative

_IDPredictionOTHERSPmTPCS_Position
PBANKA_1334100OTHER0.9994700.0004810.000049
No Results

  • Fasta :-

    >PBANKA_1334100 MDTLIGLKGKDFIILGADTYSINSIIKLKNDDKTKFYDINGNKCLLLGGSIGDRIQFGEF IRKNVHLYQYQNSTSLYVKSFAYFTRKNLAYYLRRNPYEVNCLIAGYDDKDGYQLYWCDY LSNMDAINKGAHGYGAYLVNAILDKYYHENMNLEEALVIFKKCFEELKKRFLLTQINYEL RIMSNNKIETQYVNI
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_1334100.fa Sequence name : PBANKA_1334100 Sequence length : 195 VALUES OF COMPUTED PARAMETERS Coef20 : 3.380 CoefTot : 0.000 ChDiff : 3 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.371 1.165 -0.061 0.481 MesoH : -1.352 -0.129 -0.569 0.111 MuHd_075 : 7.790 7.878 2.728 1.488 MuHd_095 : 23.094 10.386 5.126 3.865 MuHd_100 : 13.832 5.060 3.444 2.420 MuHd_105 : 12.870 3.613 3.852 0.944 Hmax_075 : 5.367 15.633 1.625 5.693 Hmax_095 : 8.137 12.500 0.690 4.655 Hmax_100 : 8.000 12.500 0.546 4.700 Hmax_105 : 4.000 11.667 0.546 4.540 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9813 0.0187 DFMC : 0.9873 0.0127
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 195 PBANKA_1334100 MDTLIGLKGKDFIILGADTYSINSIIKLKNDDKTKFYDINGNKCLLLGGSIGDRIQFGEFIRKNVHLYQYQNSTSLYVKS 80 FAYFTRKNLAYYLRRNPYEVNCLIAGYDDKDGYQLYWCDYLSNMDAINKGAHGYGAYLVNAILDKYYHENMNLEEALVIF 160 KKCFEELKKRFLLTQINYELRIMSNNKIETQYVNI 240 ................................................................................ 80 ................................................................................ 160 ................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_1334100 8 DTLIGLK|GK 0.056 . PBANKA_1334100 10 LIGLKGK|DF 0.079 . PBANKA_1334100 27 SINSIIK|LK 0.062 . PBANKA_1334100 29 NSIIKLK|ND 0.062 . PBANKA_1334100 33 KLKNDDK|TK 0.060 . PBANKA_1334100 35 KNDDKTK|FY 0.078 . PBANKA_1334100 43 YDINGNK|CL 0.058 . PBANKA_1334100 54 GGSIGDR|IQ 0.084 . PBANKA_1334100 62 QFGEFIR|KN 0.072 . PBANKA_1334100 63 FGEFIRK|NV 0.099 . PBANKA_1334100 79 STSLYVK|SF 0.076 . PBANKA_1334100 86 SFAYFTR|KN 0.091 . PBANKA_1334100 87 FAYFTRK|NL 0.078 . PBANKA_1334100 94 NLAYYLR|RN 0.078 . PBANKA_1334100 95 LAYYLRR|NP 0.107 . PBANKA_1334100 110 IAGYDDK|DG 0.066 . PBANKA_1334100 129 NMDAINK|GA 0.071 . PBANKA_1334100 145 VNAILDK|YY 0.071 . PBANKA_1334100 161 EALVIFK|KC 0.058 . PBANKA_1334100 162 ALVIFKK|CF 0.104 . PBANKA_1334100 168 KCFEELK|KR 0.054 . PBANKA_1334100 169 CFEELKK|RF 0.065 . PBANKA_1334100 170 FEELKKR|FL 0.233 . PBANKA_1334100 181 QINYELR|IM 0.083 . PBANKA_1334100 187 RIMSNNK|IE 0.062 . ____________________________^_________________

  • Fasta :-

    >PBANKA_1334100 ATGGATACATTAATCGGTTTAAAGGGAAAGGATTTCATAATTTTAGGAGCAGATACTTAT AGCATTAATTCAATTATAAAATTAAAAAATGACGATAAAACAAAATTTTATGATATAAAT GGAAATAAATGCTTATTATTAGGAGGCTCAATTGGTGATAGAATACAATTTGGAGAGTTT ATTAGAAAGAATGTTCACTTATATCAATATCAAAATTCTACTTCTTTATATGTTAAATCT TTTGCTTATTTCACAAGAAAAAATCTAGCCTATTATTTGAGGAGAAATCCATATGAAGTA AATTGCTTGATAGCTGGATATGATGATAAGGATGGATATCAACTATACTGGTGTGATTAT TTAAGTAACATGGATGCTATAAATAAAGGTGCTCATGGATATGGAGCTTATTTAGTTAAC GCCATATTGGATAAATATTATCATGAAAACATGAATTTAGAAGAGGCATTAGTTATTTTT AAAAAATGTTTTGAAGAACTAAAAAAAAGATTTCTTCTTACCCAAATTAATTACGAATTA AGAATCATGTCAAATAATAAAATAGAAACACAATACGTTAACATTTAA
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  • Fasta :-

    MDTLIGLKGKDFIILGADTYSINSIIKLKNDDKTKFYDINGNKCLLLGGSIGDRIQFGEF IRKNVHLYQYQNSTSLYVKSFAYFTRKNLAYYLRRNPYEVNCLIAGYDDKDGYQLYWCDY LSNMDAINKGAHGYGAYLVNAILDKYYHENMNLEEALVIFKKCFEELKKRFLLTQINYEL RIMSNNKIETQYVNI

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PBANKA_133410      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India