PBANKA_1343300 | proteasome subunit beta type-7, putative

_IDPredictionOTHERSPmTPCS_Position
PBANKA_1343300OTHER0.9998930.0000780.000029
No Results

  • Fasta :-

    >PBANKA_1343300 MKLDYINAIKEENGGYNFENLKRNEILKEKGVTFPKFRKTGTTICGIVCQNAVILGADTR ATEGPIVADKNCSKLHYISKNIYCAGAGVAGDLEHTTLWLQHNVELHRLNTKTQPRVAMC VSRLTQELFKYQGYKVCAIVLGGVDVTGPQLYGIHPHGSSCLLPFTALGSGSLNAMTVLE AKYRDNMTIEEGKELVCEAICAGIFNDLGSGGNVDICVITKDGTQHIRPYKQPNTRLYHL SHPTIYPKGTTPILYEKIENIKKHITIEDA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_1343300.fa Sequence name : PBANKA_1343300 Sequence length : 270 VALUES OF COMPUTED PARAMETERS Coef20 : 2.714 CoefTot : 0.009 ChDiff : 3 ZoneTo : 3 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.453 1.453 0.332 0.554 MesoH : -0.049 0.483 -0.191 0.288 MuHd_075 : 19.321 11.133 6.970 3.603 MuHd_095 : 1.233 2.590 1.253 0.406 MuHd_100 : 4.841 1.727 2.165 1.494 MuHd_105 : 9.749 7.494 3.534 2.629 Hmax_075 : -1.167 5.500 -1.843 3.120 Hmax_095 : -8.925 -0.525 -4.143 1.540 Hmax_100 : -0.500 1.700 -1.680 2.920 Hmax_105 : -6.183 4.783 -3.272 2.193 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9960 0.0040 DFMC : 0.9887 0.0113
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 270 PBANKA_1343300 MKLDYINAIKEENGGYNFENLKRNEILKEKGVTFPKFRKTGTTICGIVCQNAVILGADTRATEGPIVADKNCSKLHYISK 80 NIYCAGAGVAGDLEHTTLWLQHNVELHRLNTKTQPRVAMCVSRLTQELFKYQGYKVCAIVLGGVDVTGPQLYGIHPHGSS 160 CLLPFTALGSGSLNAMTVLEAKYRDNMTIEEGKELVCEAICAGIFNDLGSGGNVDICVITKDGTQHIRPYKQPNTRLYHL 240 SHPTIYPKGTTPILYEKIENIKKHITIEDA 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .............................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_1343300 2 -----MK|LD 0.058 . PBANKA_1343300 10 DYINAIK|EE 0.058 . PBANKA_1343300 22 YNFENLK|RN 0.056 . PBANKA_1343300 23 NFENLKR|NE 0.147 . PBANKA_1343300 28 KRNEILK|EK 0.080 . PBANKA_1343300 30 NEILKEK|GV 0.066 . PBANKA_1343300 36 KGVTFPK|FR 0.067 . PBANKA_1343300 38 VTFPKFR|KT 0.132 . PBANKA_1343300 39 TFPKFRK|TG 0.077 . PBANKA_1343300 60 ILGADTR|AT 0.099 . PBANKA_1343300 70 GPIVADK|NC 0.065 . PBANKA_1343300 74 ADKNCSK|LH 0.059 . PBANKA_1343300 80 KLHYISK|NI 0.077 . PBANKA_1343300 108 HNVELHR|LN 0.083 . PBANKA_1343300 112 LHRLNTK|TQ 0.062 . PBANKA_1343300 116 NTKTQPR|VA 0.096 . PBANKA_1343300 123 VAMCVSR|LT 0.092 . PBANKA_1343300 130 LTQELFK|YQ 0.074 . PBANKA_1343300 135 FKYQGYK|VC 0.069 . PBANKA_1343300 182 MTVLEAK|YR 0.064 . PBANKA_1343300 184 VLEAKYR|DN 0.166 . PBANKA_1343300 193 MTIEEGK|EL 0.057 . PBANKA_1343300 221 DICVITK|DG 0.069 . PBANKA_1343300 228 DGTQHIR|PY 0.080 . PBANKA_1343300 231 QHIRPYK|QP 0.124 . PBANKA_1343300 236 YKQPNTR|LY 0.100 . PBANKA_1343300 248 HPTIYPK|GT 0.079 . PBANKA_1343300 257 TPILYEK|IE 0.063 . PBANKA_1343300 262 EKIENIK|KH 0.065 . PBANKA_1343300 263 KIENIKK|HI 0.095 . ____________________________^_________________

  • Fasta :-

    >PBANKA_1343300 ATGAAACTCGATTATATAAATGCGATAAAAGAAGAAAATGGAGGATATAATTTTGAAAAC CTAAAAAGAAATGAAATTTTGAAGGAAAAAGGAGTAACCTTTCCAAAATTTCGAAAAACA GGAACAACTATTTGTGGAATAGTCTGTCAAAATGCAGTTATATTAGGAGCCGATACACGA GCAACAGAAGGGCCTATAGTTGCAGATAAAAATTGTAGTAAATTACATTACATAAGCAAA AATATATATTGCGCGGGCGCAGGTGTGGCAGGAGATTTAGAGCACACTACATTATGGCTA CAACACAATGTTGAGTTACACCGTTTGAATACAAAAACTCAACCTAGGGTAGCTATGTGC GTGTCGAGATTAACTCAAGAATTATTTAAATATCAAGGTTACAAAGTATGTGCAATAGTA TTAGGAGGTGTAGATGTTACTGGACCACAGTTATATGGTATACACCCTCATGGATCGTCT TGTCTCTTACCATTTACAGCTTTAGGATCAGGGTCTTTAAATGCTATGACAGTTTTAGAG GCAAAATACAGAGACAACATGACAATAGAAGAAGGAAAAGAACTTGTATGTGAAGCTATA TGTGCAGGTATTTTTAATGATTTAGGTTCTGGTGGAAATGTGGATATTTGTGTCATAACG AAAGATGGCACACAACATATAAGACCTTATAAGCAACCAAATACTCGATTGTATCATTTA TCACATCCAACTATTTATCCAAAGGGAACTACACCAATTTTATATGAAAAAATTGAAAAT ATTAAAAAACATATTACTATAGAAGATGCATAA
  • Download Fasta

  • Fasta :-

    MKLDYINAIKEENGGYNFENLKRNEILKEKGVTFPKFRKTGTTICGIVCQNAVILGADTR ATEGPIVADKNCSKLHYISKNIYCAGAGVAGDLEHTTLWLQHNVELHRLNTKTQPRVAMC VSRLTQELFKYQGYKVCAIVLGGVDVTGPQLYGIHPHGSSCLLPFTALGSGSLNAMTVLE AKYRDNMTIEEGKELVCEAICAGIFNDLGSGGNVDICVITKDGTQHIRPYKQPNTRLYHL SHPTIYPKGTTPILYEKIENIKKHITIEDA

  • title: active site
  • coordinates: T42,D58,R60,K74,S170,D207,S210,G211
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PBANKA_134330      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India