PBANKA_1404100 | site-2 protease S2P

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_IDPredictionOTHERSPmTPCS_Position
PBANKA_1404100OTHER0.9999950.0000000.000005
No Results

  • Fasta :-

    >PBANKA_1404100 MTSRNIISYFNDVQTEKKQLSSNWLLIHNEKSYWDHKDQSYLSFILSLLPLFLISVIHLS IILNGYYIGHLFLTISYLLSICFFIIYFYNSYTIFILFVFFSFIISLCLHEFAHALVAYK YGDITMVYKGYLYLDIFNYLDIFHTLIIPLITLFITGFGIPGNLYWLQLHFIRSRFQLSF IFLSGPISDILYILLFVFFYNMYTFFKNNIKFNVKPHPALFISLATSISFLVESFLLNIC PILGFDGWGVIEPYLPYFLNDIINEEIVYNFLSYVCPLLVFIYFNFIETKFFFFTKITNY ILQDLLGIAIDHAAFGADSFPTLYSYLKKM
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_1404100.fa Sequence name : PBANKA_1404100 Sequence length : 330 VALUES OF COMPUTED PARAMETERS Coef20 : 3.911 CoefTot : -0.066 ChDiff : -4 ZoneTo : 11 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.724 2.812 0.594 0.934 MesoH : 1.723 1.848 0.258 0.727 MuHd_075 : 19.881 9.478 3.938 4.842 MuHd_095 : 19.643 12.159 3.794 4.457 MuHd_100 : 19.049 14.807 5.128 5.476 MuHd_105 : 20.788 17.936 7.150 6.366 Hmax_075 : 2.917 1.750 -2.743 1.902 Hmax_095 : -0.262 3.500 -2.798 1.986 Hmax_100 : 1.700 7.800 -1.465 2.570 Hmax_105 : 5.017 13.183 -0.029 3.990 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7721 0.2279 DFMC : 0.8066 0.1934
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 330 PBANKA_1404100 MTSRNIISYFNDVQTEKKQLSSNWLLIHNEKSYWDHKDQSYLSFILSLLPLFLISVIHLSIILNGYYIGHLFLTISYLLS 80 ICFFIIYFYNSYTIFILFVFFSFIISLCLHEFAHALVAYKYGDITMVYKGYLYLDIFNYLDIFHTLIIPLITLFITGFGI 160 PGNLYWLQLHFIRSRFQLSFIFLSGPISDILYILLFVFFYNMYTFFKNNIKFNVKPHPALFISLATSISFLVESFLLNIC 240 PILGFDGWGVIEPYLPYFLNDIINEEIVYNFLSYVCPLLVFIYFNFIETKFFFFTKITNYILQDLLGIAIDHAAFGADSF 320 PTLYSYLKKM 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .......... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_1404100 4 ---MTSR|NI 0.095 . PBANKA_1404100 17 NDVQTEK|KQ 0.055 . PBANKA_1404100 18 DVQTEKK|QL 0.092 . PBANKA_1404100 31 LLIHNEK|SY 0.091 . PBANKA_1404100 37 KSYWDHK|DQ 0.068 . PBANKA_1404100 120 HALVAYK|YG 0.063 . PBANKA_1404100 129 DITMVYK|GY 0.057 . PBANKA_1404100 173 LQLHFIR|SR 0.105 . PBANKA_1404100 175 LHFIRSR|FQ 0.076 . PBANKA_1404100 207 NMYTFFK|NN 0.061 . PBANKA_1404100 211 FFKNNIK|FN 0.060 . PBANKA_1404100 215 NIKFNVK|PH 0.057 . PBANKA_1404100 290 FNFIETK|FF 0.065 . PBANKA_1404100 296 KFFFFTK|IT 0.075 . PBANKA_1404100 328 TLYSYLK|KM 0.060 . PBANKA_1404100 329 LYSYLKK|M- 0.133 . ____________________________^_________________

  • Fasta :-

    >PBANKA_1404100 ATGACTTCAAGAAATATAATATCATATTTTAATGATGTTCAAACGGAGAAAAAACAATTA TCAAGTAATTGGTTGTTAATACATAATGAAAAAAGTTATTGGGATCATAAGGATCAAAGT TATTTATCATTTATATTGTCATTACTACCATTATTTTTGATAAGTGTAATACATTTATCA ATTATACTGAATGGTTATTATATTGGGCATTTATTCTTAACAATATCATATTTGCTTTCC ATTTGTTTTTTTATTATATACTTTTACAATTCTTATACTATATTTATTTTGTTTGTATTT TTTTCATTTATAATATCCTTGTGCTTACATGAGTTTGCTCATGCTTTAGTTGCTTACAAA TATGGCGATATTACCATGGTTTATAAAGGGTATTTATATTTGGACATTTTTAATTATTTG GACATATTCCATACATTGATAATACCATTAATAACATTATTTATAACAGGATTTGGCATA CCAGGAAATTTATATTGGTTACAACTGCATTTTATAAGAAGTAGATTTCAGTTATCTTTT ATATTTTTGTCTGGTCCAATATCAGATATTTTATATATTTTACTATTTGTTTTTTTTTAT AACATGTACACTTTTTTTAAAAATAATATAAAATTTAATGTGAAGCCACATCCTGCTTTA TTCATATCTTTAGCAACATCAATATCTTTCCTAGTAGAATCATTTCTTTTAAATATTTGT CCTATTCTTGGATTTGATGGATGGGGGGTTATCGAGCCATATTTGCCTTATTTCTTAAAC GATATAATCAACGAAGAGATTGTGTACAACTTCTTATCTTACGTGTGTCCACTTCTTGTT TTTATATATTTTAATTTTATTGAGACAAAATTTTTTTTTTTCACAAAAATTACAAATTAT ATATTACAAGATCTTTTGGGAATTGCAATAGATCATGCAGCCTTTGGCGCCGATTCATTT CCAACATTGTATTCATATCTCAAAAAAATGTGA
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  • Fasta :-

    MTSRNIISYFNDVQTEKKQLSSNWLLIHNEKSYWDHKDQSYLSFILSLLPLFLISVIHLS IILNGYYIGHLFLTISYLLSICFFIIYFYNSYTIFILFVFFSFIISLCLHEFAHALVAYK YGDITMVYKGYLYLDIFNYLDIFHTLIIPLITLFITGFGIPGNLYWLQLHFIRSRFQLSF IFLSGPISDILYILLFVFFYNMYTFFKNNIKFNVKPHPALFISLATSISFLVESFLLNIC PILGFDGWGVIEPYLPYFLNDIINEEIVYNFLSYVCPLLVFIYFNFIETKFFFFTKITNY ILQDLLGIAIDHAAFGADSFPTLYSYLKKM

    No Results
  • title: active site
  • coordinates: H110,E111,H114,N238,D246
No Results
No Results
IDSitePeptideScoreMethod
PBANKA_140410032 SHNEKSYWDH0.99unsp

PBANKA_140410      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India