PBANKA_1404900 | 26S protease regulatory subunit 10B, putative

_IDPredictionOTHERSPmTPCS_Position
PBANKA_1404900OTHER0.9999600.0000090.000031
No Results

  • Fasta :-

    >PBANKA_1404900 MDNKESVRLYVKKVIEHREIESKVKKLRLDIKELNKKYEKTEDNLKALQSVGQIIGQVLK QLEDDKFIVKASSGPRYVVGCKSKINKSKLEIGTRVSLDMTTLTVMKRLPCEVDPLVFNM ISDIDKGENSTNKVNYNQIGGLSEQIRQMREVVELPILNPFLFKRVGIKTPKGVLLYGPP GTGKTLLARAMASNINCNFMRIVVSSIVDKYIGESARIIREMFTYAKEHQPCIIFMDEID AIGGRRFSQGTSADREIQRTLMELLNHLDGFEELGNVKIIMATNRPDVLDPALVRPGRLD RKIEIPLPNETARIEILKIHANKMTKMGDIDYESVCRLCEGFNGADLRNVCTEAGMFAIR AMRDYVIEEDFYKAARKINEAKKLEGKLEYEKI
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_1404900.fa Sequence name : PBANKA_1404900 Sequence length : 393 VALUES OF COMPUTED PARAMETERS Coef20 : 3.653 CoefTot : 0.000 ChDiff : 9 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.218 1.153 -0.080 0.412 MesoH : -0.649 0.405 -0.360 0.191 MuHd_075 : 44.110 23.339 12.648 10.023 MuHd_095 : 20.861 15.242 7.784 3.706 MuHd_100 : 20.116 14.186 6.081 2.980 MuHd_105 : 21.754 12.413 4.499 3.135 Hmax_075 : 3.500 11.200 -0.440 4.387 Hmax_095 : -5.512 7.800 -1.844 1.680 Hmax_100 : -11.500 5.200 -4.599 -0.080 Hmax_105 : -9.500 5.337 -4.571 0.880 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8746 0.1254 DFMC : 0.9167 0.0833
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 393 PBANKA_1404900 MDNKESVRLYVKKVIEHREIESKVKKLRLDIKELNKKYEKTEDNLKALQSVGQIIGQVLKQLEDDKFIVKASSGPRYVVG 80 CKSKINKSKLEIGTRVSLDMTTLTVMKRLPCEVDPLVFNMISDIDKGENSTNKVNYNQIGGLSEQIRQMREVVELPILNP 160 FLFKRVGIKTPKGVLLYGPPGTGKTLLARAMASNINCNFMRIVVSSIVDKYIGESARIIREMFTYAKEHQPCIIFMDEID 240 AIGGRRFSQGTSADREIQRTLMELLNHLDGFEELGNVKIIMATNRPDVLDPALVRPGRLDRKIEIPLPNETARIEILKIH 320 ANKMTKMGDIDYESVCRLCEGFNGADLRNVCTEAGMFAIRAMRDYVIEEDFYKAARKINEAKKLEGKLEYEKI 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ......................................................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_1404900 4 ---MDNK|ES 0.053 . PBANKA_1404900 8 DNKESVR|LY 0.079 . PBANKA_1404900 12 SVRLYVK|KV 0.070 . PBANKA_1404900 13 VRLYVKK|VI 0.136 . PBANKA_1404900 18 KKVIEHR|EI 0.102 . PBANKA_1404900 23 HREIESK|VK 0.060 . PBANKA_1404900 25 EIESKVK|KL 0.061 . PBANKA_1404900 26 IESKVKK|LR 0.100 . PBANKA_1404900 28 SKVKKLR|LD 0.108 . PBANKA_1404900 32 KLRLDIK|EL 0.068 . PBANKA_1404900 36 DIKELNK|KY 0.064 . PBANKA_1404900 37 IKELNKK|YE 0.086 . PBANKA_1404900 40 LNKKYEK|TE 0.055 . PBANKA_1404900 46 KTEDNLK|AL 0.061 . PBANKA_1404900 60 IIGQVLK|QL 0.068 . PBANKA_1404900 66 KQLEDDK|FI 0.063 . PBANKA_1404900 70 DDKFIVK|AS 0.060 . PBANKA_1404900 76 KASSGPR|YV 0.132 . PBANKA_1404900 82 RYVVGCK|SK 0.068 . PBANKA_1404900 84 VVGCKSK|IN 0.066 . PBANKA_1404900 87 CKSKINK|SK 0.104 . PBANKA_1404900 89 SKINKSK|LE 0.074 . PBANKA_1404900 95 KLEIGTR|VS 0.072 . PBANKA_1404900 107 TTLTVMK|RL 0.057 . PBANKA_1404900 108 TLTVMKR|LP 0.146 . PBANKA_1404900 126 MISDIDK|GE 0.065 . PBANKA_1404900 133 GENSTNK|VN 0.069 . PBANKA_1404900 147 GLSEQIR|QM 0.125 . PBANKA_1404900 150 EQIRQMR|EV 0.279 . PBANKA_1404900 164 LNPFLFK|RV 0.083 . PBANKA_1404900 165 NPFLFKR|VG 0.164 . PBANKA_1404900 169 FKRVGIK|TP 0.063 . PBANKA_1404900 172 VGIKTPK|GV 0.074 . PBANKA_1404900 184 GPPGTGK|TL 0.060 . PBANKA_1404900 189 GKTLLAR|AM 0.083 . PBANKA_1404900 201 INCNFMR|IV 0.139 . PBANKA_1404900 210 VSSIVDK|YI 0.108 . PBANKA_1404900 217 YIGESAR|II 0.113 . PBANKA_1404900 220 ESARIIR|EM 0.257 . PBANKA_1404900 227 EMFTYAK|EH 0.060 . PBANKA_1404900 245 IDAIGGR|RF 0.101 . PBANKA_1404900 246 DAIGGRR|FS 0.106 . PBANKA_1404900 255 QGTSADR|EI 0.077 . PBANKA_1404900 259 ADREIQR|TL 0.105 . PBANKA_1404900 278 EELGNVK|II 0.056 . PBANKA_1404900 285 IIMATNR|PD 0.073 . PBANKA_1404900 295 LDPALVR|PG 0.068 . PBANKA_1404900 298 ALVRPGR|LD 0.235 . PBANKA_1404900 301 RPGRLDR|KI 0.348 . PBANKA_1404900 302 PGRLDRK|IE 0.071 . PBANKA_1404900 313 LPNETAR|IE 0.114 . PBANKA_1404900 318 ARIEILK|IH 0.064 . PBANKA_1404900 323 LKIHANK|MT 0.073 . PBANKA_1404900 326 HANKMTK|MG 0.069 . PBANKA_1404900 337 DYESVCR|LC 0.072 . PBANKA_1404900 348 FNGADLR|NV 0.153 . PBANKA_1404900 360 AGMFAIR|AM 0.092 . PBANKA_1404900 363 FAIRAMR|DY 0.313 . PBANKA_1404900 373 IEEDFYK|AA 0.076 . PBANKA_1404900 376 DFYKAAR|KI 0.093 . PBANKA_1404900 377 FYKAARK|IN 0.084 . PBANKA_1404900 382 RKINEAK|KL 0.088 . PBANKA_1404900 383 KINEAKK|LE 0.117 . PBANKA_1404900 387 AKKLEGK|LE 0.059 . PBANKA_1404900 392 GKLEYEK|I- 0.057 . ____________________________^_________________

  • Fasta :-

    >PBANKA_1404900 ATGGATAATAAAGAGAGCGTAAGATTGTATGTGAAAAAAGTAATAGAACATAGAGAAATA GAAAGTAAAGTAAAAAAATTAAGGTTAGATATAAAAGAATTGAATAAAAAATATGAAAAA ACAGAAGATAATTTAAAAGCCTTACAAAGTGTAGGCCAAATAATAGGACAAGTGTTAAAA CAATTAGAAGATGATAAGTTTATTGTGAAAGCATCAAGCGGACCCAGATATGTAGTGGGG TGTAAGTCAAAAATAAATAAAAGTAAGTTAGAGATTGGTACAAGAGTATCACTAGATATG ACAACATTAACAGTAATGAAAAGATTACCATGTGAAGTAGATCCATTAGTATTTAATATG ATAAGTGATATAGATAAGGGTGAGAATAGTACAAATAAAGTAAATTATAACCAAATAGGT GGATTAAGTGAACAAATAAGGCAAATGAGAGAGGTAGTTGAATTACCAATATTAAATCCA TTTTTATTCAAAAGAGTAGGAATTAAAACTCCTAAGGGTGTTTTATTATACGGTCCACCA GGGACAGGAAAAACATTATTAGCAAGAGCTATGGCTTCTAATATTAATTGCAATTTTATG AGAATAGTTGTTTCATCTATAGTTGATAAATACATTGGTGAAAGTGCTAGAATTATCAGA GAAATGTTTACATATGCTAAAGAGCACCAACCATGTATTATATTTATGGACGAAATTGAT GCCATAGGTGGACGAAGATTTTCTCAAGGTACTTCTGCTGATAGAGAAATTCAGAGAACA CTTATGGAGTTATTAAATCATTTAGATGGTTTTGAAGAGTTGGGAAATGTTAAAATTATT ATGGCTACTAATAGACCTGATGTATTAGATCCTGCTTTGGTTAGGCCTGGAAGATTAGAT AGAAAAATTGAAATTCCTTTACCAAATGAAACGGCAAGAATTGAAATTTTGAAAATACAT GCAAATAAAATGACTAAAATGGGGGATATAGATTATGAGTCTGTTTGCCGATTATGTGAA GGTTTTAACGGAGCGGATTTAAGGAATGTTTGTACTGAAGCAGGAATGTTTGCTATCAGG GCTATGCGTGATTATGTTATTGAGGAAGATTTTTATAAAGCTGCTCGAAAAATTAACGAA GCCAAAAAATTAGAAGGGAAACTAGAATATGAAAAAATATAA
  • Download Fasta

  • Fasta :-

    MDNKESVRLYVKKVIEHREIESKVKKLRLDIKELNKKYEKTEDNLKALQSVGQIIGQVLK QLEDDKFIVKASSGPRYVVGCKSKINKSKLEIGTRVSLDMTTLTVMKRLPCEVDPLVFNM ISDIDKGENSTNKVNYNQIGGLSEQIRQMREVVELPILNPFLFKRVGIKTPKGVLLYGPP GTGKTLLARAMASNINCNFMRIVVSSIVDKYIGESARIIREMFTYAKEHQPCIIFMDEID AIGGRRFSQGTSADREIQRTLMELLNHLDGFEELGNVKIIMATNRPDVLDPALVRPGRLD RKIEIPLPNETARIEILKIHANKMTKMGDIDYESVCRLCEGFNGADLRNVCTEAGMFAIR AMRDYVIEEDFYKAARKINEAKKLEGKLEYEKI

  • title: ATP binding site
  • coordinates: P179,P180,G181,T182,G183,K184,T185,L186,D237,N284
No Results
No Results
IDSitePeptideScoreMethod
PBANKA_1404900248 SGRRFSQGTS0.994unsp

PBANKA_140490      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India