PBANKA_1418700 | microsomal signal peptidase, putative

_IDPredictionOTHERSPmTPCS_Position
PBANKA_1418700OTHER0.9953350.0000830.004582
No Results

  • Fasta :-

    >PBANKA_1418700 MRNIYSPKCFKNESFFHSKINLKFVSYNTKNDTHIYSAKINNGYAFRKNLNLKKIKNSLK SINNIPHSCYRTHLLKKYGLTKRREGYNINKDKIERYFNFVRIYHSLNFIKNIILCLLLI YGVNNYVFDMTLTSGSSMYPLINKNGVILFYICDCSLRLFNELRNIALYNYINILYKIYN IIHRNFDNINFVKVKNIIANKIENLTNKITSNKHVYKRGDVVLLISPVNSNKRVCKRIIG MEHDKLFVNDFNSFVEIPKNHIWVEGDNKLDSFDSRNYGCVNINLVIGKIFFLLDPFRSF SFITNKRNYEIEPNRFLYMSN
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_1418700.fa Sequence name : PBANKA_1418700 Sequence length : 321 VALUES OF COMPUTED PARAMETERS Coef20 : 3.854 CoefTot : -3.858 ChDiff : 27 ZoneTo : 84 KR : 19 DE : 2 CleavSite : 85 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.976 1.994 0.162 0.669 MesoH : -0.078 0.773 -0.188 0.342 MuHd_075 : 40.048 28.255 14.056 9.387 MuHd_095 : 43.754 26.503 15.346 9.431 MuHd_100 : 49.743 33.329 17.445 10.840 MuHd_105 : 48.096 38.253 18.184 11.015 Hmax_075 : 14.817 15.050 4.430 5.402 Hmax_095 : 11.000 12.300 3.763 4.690 Hmax_100 : 14.500 17.400 4.772 5.530 Hmax_105 : 17.500 22.800 5.846 6.510 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0889 0.9111 DFMC : 0.1243 0.8757 This protein is probably imported in mitochondria. f(Ser) = 0.0952 f(Arg) = 0.0595 CMi = 0.62112 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 321 PBANKA_1418700 MRNIYSPKCFKNESFFHSKINLKFVSYNTKNDTHIYSAKINNGYAFRKNLNLKKIKNSLKSINNIPHSCYRTHLLKKYGL 80 TKRREGYNINKDKIERYFNFVRIYHSLNFIKNIILCLLLIYGVNNYVFDMTLTSGSSMYPLINKNGVILFYICDCSLRLF 160 NELRNIALYNYINILYKIYNIIHRNFDNINFVKVKNIIANKIENLTNKITSNKHVYKRGDVVLLISPVNSNKRVCKRIIG 240 MEHDKLFVNDFNSFVEIPKNHIWVEGDNKLDSFDSRNYGCVNINLVIGKIFFLLDPFRSFSFITNKRNYEIEPNRFLYMS 320 N 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 . 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_1418700 2 -----MR|NI 0.080 . PBANKA_1418700 8 RNIYSPK|CF 0.069 . PBANKA_1418700 11 YSPKCFK|NE 0.054 . PBANKA_1418700 19 ESFFHSK|IN 0.061 . PBANKA_1418700 23 HSKINLK|FV 0.085 . PBANKA_1418700 30 FVSYNTK|ND 0.067 . PBANKA_1418700 39 THIYSAK|IN 0.073 . PBANKA_1418700 47 NNGYAFR|KN 0.072 . PBANKA_1418700 48 NGYAFRK|NL 0.073 . PBANKA_1418700 53 RKNLNLK|KI 0.077 . PBANKA_1418700 54 KNLNLKK|IK 0.077 . PBANKA_1418700 56 LNLKKIK|NS 0.066 . PBANKA_1418700 60 KIKNSLK|SI 0.103 . PBANKA_1418700 71 IPHSCYR|TH 0.077 . PBANKA_1418700 76 YRTHLLK|KY 0.061 . PBANKA_1418700 77 RTHLLKK|YG 0.113 . PBANKA_1418700 82 KKYGLTK|RR 0.062 . PBANKA_1418700 83 KYGLTKR|RE 0.134 . PBANKA_1418700 84 YGLTKRR|EG 0.109 . PBANKA_1418700 91 EGYNINK|DK 0.064 . PBANKA_1418700 93 YNINKDK|IE 0.063 . PBANKA_1418700 96 NKDKIER|YF 0.087 . PBANKA_1418700 102 RYFNFVR|IY 0.080 . PBANKA_1418700 111 HSLNFIK|NI 0.067 . PBANKA_1418700 144 MYPLINK|NG 0.050 . PBANKA_1418700 158 ICDCSLR|LF 0.073 . PBANKA_1418700 164 RLFNELR|NI 0.078 . PBANKA_1418700 177 YINILYK|IY 0.071 . PBANKA_1418700 184 IYNIIHR|NF 0.095 . PBANKA_1418700 193 DNINFVK|VK 0.061 . PBANKA_1418700 195 INFVKVK|NI 0.072 . PBANKA_1418700 201 KNIIANK|IE 0.055 . PBANKA_1418700 208 IENLTNK|IT 0.074 . PBANKA_1418700 213 NKITSNK|HV 0.089 . PBANKA_1418700 217 SNKHVYK|RG 0.077 . PBANKA_1418700 218 NKHVYKR|GD 0.231 . PBANKA_1418700 232 SPVNSNK|RV 0.084 . PBANKA_1418700 233 PVNSNKR|VC 0.175 . PBANKA_1418700 236 SNKRVCK|RI 0.241 . PBANKA_1418700 237 NKRVCKR|II 0.329 . PBANKA_1418700 245 IGMEHDK|LF 0.061 . PBANKA_1418700 259 SFVEIPK|NH 0.065 . PBANKA_1418700 269 WVEGDNK|LD 0.056 . PBANKA_1418700 276 LDSFDSR|NY 0.127 . PBANKA_1418700 289 INLVIGK|IF 0.060 . PBANKA_1418700 298 FLLDPFR|SF 0.112 . PBANKA_1418700 306 FSFITNK|RN 0.067 . PBANKA_1418700 307 SFITNKR|NY 0.175 . PBANKA_1418700 315 YEIEPNR|FL 0.090 . ____________________________^_________________

  • Fasta :-

    >PBANKA_1418700 ATGAGAAATATATACTCGCCAAAATGCTTTAAAAATGAAAGTTTTTTTCATAGTAAGATT AATCTGAAATTCGTTAGTTATAATACAAAAAACGACACGCATATATATTCAGCTAAAATT AATAATGGATATGCATTTCGGAAAAATTTAAATTTAAAAAAAATAAAAAATTCCCTCAAA AGTATTAATAATATACCACATTCATGTTATAGAACACATTTATTAAAGAAATATGGATTA ACAAAAAGGCGAGAAGGATATAATATAAATAAAGATAAAATTGAGAGATATTTTAATTTT GTTAGAATTTATCATTCATTAAATTTTATAAAAAATATAATACTATGTTTGTTGCTTATT TATGGGGTAAATAATTACGTTTTTGACATGACACTTACTAGTGGTTCTAGTATGTATCCA TTAATAAATAAAAATGGGGTAATATTATTTTATATTTGTGATTGCTCTTTACGACTTTTT AACGAACTCCGGAATATTGCATTATATAATTATATAAATATATTATATAAAATTTATAAT ATTATTCATAGAAATTTTGATAACATAAATTTTGTAAAAGTTAAAAACATAATAGCAAAC AAAATTGAGAATTTAACAAATAAAATAACATCAAATAAACATGTCTATAAAAGAGGTGAT GTTGTATTGCTAATATCACCAGTTAATAGTAATAAAAGAGTGTGTAAGAGGATTATTGGA ATGGAACATGATAAATTATTTGTAAATGATTTTAATTCATTTGTTGAAATTCCAAAAAAT CATATATGGGTAGAGGGCGATAATAAACTGGATTCTTTTGATAGTAGAAATTATGGGTGT GTAAATATAAATTTAGTAATTGGAAAAATATTTTTTCTACTAGACCCATTTAGAAGCTTT TCTTTTATTACCAACAAAAGGAATTATGAAATTGAACCAAATCGATTTTTGTATATGTCT AATTAG
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  • Fasta :-

    MRNIYSPKCFKNESFFHSKINLKFVSYNTKNDTHIYSAKINNGYAFRKNLNLKKIKNSLK SINNIPHSCYRTHLLKKYGLTKRREGYNINKDKIERYFNFVRIYHSLNFIKNIILCLLLI YGVNNYVFDMTLTSGSSMYPLINKNGVILFYICDCSLRLFNELRNIALYNYINILYKIYN IIHRNFDNINFVKVKNIIANKIENLTNKITSNKHVYKRGDVVLLISPVNSNKRVCKRIIG MEHDKLFVNDFNSFVEIPKNHIWVEGDNKLDSFDSRNYGCVNINLVIGKIFFLLDPFRSF SFITNKRNYEIEPNRFLYMSN

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PBANKA_141870      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India