PBANKA_1425300 | trypsin-like serine protease, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0005515      

  • Computed_GO_Functions:  protein binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PBANKA_1425300OTHER0.9034960.0279100.068595
No Results

  • Fasta :-

    >PBANKA_1425300 MKKSNLSLFKSIVKHSWRASLFCYSTIFIHSSVNTLLASYNDKEKGVYKDKRKNNFDFFA TISLKIIPISYCSCQLVYKCDNNNALPTETEYNNLELFKRVFFKLIQYEYFIIHKIIRCI NEFIIFVLYSLANFYLYFHSIFFNICNLLSKIYHGESNNGSLHAYPNIPYNIINSFVTIH KIYEHNKIPLKHDFKNDQLEYMGSEFIYDKRGYILTAAHNITNLEDKFVVKNNNGLYFAT LLGLHKGSDVCVMKINSEEPFSYISLDKIRDELKQGESVVTYGQIQDFDKETYSMSGSPL LDQYGNLVGMIQKKIDNYGLALPANILKNVAIHLQNKGVYKEPFLGIVFREKALIIQNSR SLTKELKISSILANSSADLGNLKKEDIISKINNKDIESICDVHEIINSTSDRYINVDGIR NDKKFKTQIKLW
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_1425300.fa Sequence name : PBANKA_1425300 Sequence length : 432 VALUES OF COMPUTED PARAMETERS Coef20 : 4.518 CoefTot : 0.389 ChDiff : 9 ZoneTo : 41 KR : 5 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.429 1.800 0.292 0.708 MesoH : -0.008 0.634 -0.275 0.366 MuHd_075 : 31.199 22.776 9.388 7.246 MuHd_095 : 45.153 23.315 12.272 9.568 MuHd_100 : 35.779 21.097 10.725 8.394 MuHd_105 : 28.609 19.486 9.152 6.871 Hmax_075 : 17.500 18.900 2.371 6.960 Hmax_095 : 11.638 10.587 0.571 4.629 Hmax_100 : 8.600 10.200 4.498 3.660 Hmax_105 : 11.287 18.800 4.696 5.060 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0261 0.9739 DFMC : 0.0600 0.9400 This protein is probably imported in chloroplast. f(Ser) = 0.2195 f(Arg) = 0.0244 CMi = 2.10773 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 432 PBANKA_1425300 MKKSNLSLFKSIVKHSWRASLFCYSTIFIHSSVNTLLASYNDKEKGVYKDKRKNNFDFFATISLKIIPISYCSCQLVYKC 80 DNNNALPTETEYNNLELFKRVFFKLIQYEYFIIHKIIRCINEFIIFVLYSLANFYLYFHSIFFNICNLLSKIYHGESNNG 160 SLHAYPNIPYNIINSFVTIHKIYEHNKIPLKHDFKNDQLEYMGSEFIYDKRGYILTAAHNITNLEDKFVVKNNNGLYFAT 240 LLGLHKGSDVCVMKINSEEPFSYISLDKIRDELKQGESVVTYGQIQDFDKETYSMSGSPLLDQYGNLVGMIQKKIDNYGL 320 ALPANILKNVAIHLQNKGVYKEPFLGIVFREKALIIQNSRSLTKELKISSILANSSADLGNLKKEDIISKINNKDIESIC 400 DVHEIINSTSDRYINVDGIRNDKKFKTQIKLW 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................ 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_1425300 2 -----MK|KS 0.062 . PBANKA_1425300 3 ----MKK|SN 0.128 . PBANKA_1425300 10 SNLSLFK|SI 0.075 . PBANKA_1425300 14 LFKSIVK|HS 0.057 . PBANKA_1425300 18 IVKHSWR|AS 0.086 . PBANKA_1425300 43 LASYNDK|EK 0.073 . PBANKA_1425300 45 SYNDKEK|GV 0.084 . PBANKA_1425300 49 KEKGVYK|DK 0.084 . PBANKA_1425300 51 KGVYKDK|RK 0.059 . PBANKA_1425300 52 GVYKDKR|KN 0.168 . PBANKA_1425300 53 VYKDKRK|NN 0.092 . PBANKA_1425300 65 FATISLK|II 0.058 . PBANKA_1425300 79 SCQLVYK|CD 0.060 . PBANKA_1425300 99 NNLELFK|RV 0.074 . PBANKA_1425300 100 NLELFKR|VF 0.154 . PBANKA_1425300 104 FKRVFFK|LI 0.078 . PBANKA_1425300 115 EYFIIHK|II 0.060 . PBANKA_1425300 118 IIHKIIR|CI 0.101 . PBANKA_1425300 151 ICNLLSK|IY 0.064 . PBANKA_1425300 181 SFVTIHK|IY 0.060 . PBANKA_1425300 187 KIYEHNK|IP 0.059 . PBANKA_1425300 191 HNKIPLK|HD 0.062 . PBANKA_1425300 195 PLKHDFK|ND 0.060 . PBANKA_1425300 210 SEFIYDK|RG 0.055 . PBANKA_1425300 211 EFIYDKR|GY 0.119 . PBANKA_1425300 227 ITNLEDK|FV 0.094 . PBANKA_1425300 231 EDKFVVK|NN 0.064 . PBANKA_1425300 246 TLLGLHK|GS 0.065 . PBANKA_1425300 254 SDVCVMK|IN 0.077 . PBANKA_1425300 268 SYISLDK|IR 0.059 . PBANKA_1425300 270 ISLDKIR|DE 0.122 . PBANKA_1425300 274 KIRDELK|QG 0.067 . PBANKA_1425300 290 QIQDFDK|ET 0.066 . PBANKA_1425300 313 LVGMIQK|KI 0.066 . PBANKA_1425300 314 VGMIQKK|ID 0.106 . PBANKA_1425300 328 LPANILK|NV 0.081 . PBANKA_1425300 337 AIHLQNK|GV 0.092 . PBANKA_1425300 341 QNKGVYK|EP 0.067 . PBANKA_1425300 350 FLGIVFR|EK 0.094 . PBANKA_1425300 352 GIVFREK|AL 0.067 . PBANKA_1425300 360 LIIQNSR|SL 0.133 . PBANKA_1425300 364 NSRSLTK|EL 0.060 . PBANKA_1425300 367 SLTKELK|IS 0.062 . PBANKA_1425300 383 ADLGNLK|KE 0.055 . PBANKA_1425300 384 DLGNLKK|ED 0.081 . PBANKA_1425300 390 KEDIISK|IN 0.063 . PBANKA_1425300 394 ISKINNK|DI 0.082 . PBANKA_1425300 412 INSTSDR|YI 0.133 . PBANKA_1425300 420 INVDGIR|ND 0.082 . PBANKA_1425300 423 DGIRNDK|KF 0.102 . PBANKA_1425300 424 GIRNDKK|FK 0.147 . PBANKA_1425300 426 RNDKKFK|TQ 0.064 . PBANKA_1425300 430 KFKTQIK|LW 0.066 . ____________________________^_________________

  • Fasta :-

    >PBANKA_1425300 ATGAAAAAAAGCAACTTGTCGCTATTTAAAAGTATAGTAAAACATTCTTGGCGAGCATCT TTATTTTGTTATTCAACAATATTTATTCATAGTTCAGTGAATACTCTATTAGCTTCATAT AATGATAAAGAAAAGGGTGTATATAAAGATAAAAGAAAAAATAACTTTGATTTTTTCGCC ACAATTTCTTTAAAAATCATTCCCATATCATATTGCAGTTGCCAACTTGTATATAAATGT GATAATAATAATGCATTACCTACTGAAACAGAATATAATAATTTAGAATTATTCAAGCGT GTGTTTTTTAAATTAATACAATATGAATATTTTATAATTCATAAAATAATTCGTTGTATT AATGAGTTTATAATATTTGTTTTATATTCTTTAGCTAATTTTTATTTATATTTTCATAGC ATATTCTTTAATATATGTAATCTATTAAGTAAAATATATCATGGGGAGAGTAACAATGGT TCGTTGCATGCATATCCTAATATCCCTTATAACATTATTAACAGTTTTGTAACTATTCAT AAAATTTATGAACATAATAAAATACCATTAAAACATGATTTTAAAAATGACCAATTGGAA TATATGGGTTCCGAATTCATCTATGACAAAAGGGGATACATATTAACAGCTGCTCACAAC ATAACCAATCTAGAAGATAAATTTGTTGTAAAAAATAATAATGGTTTATACTTTGCAACT TTGCTTGGTTTGCATAAAGGATCAGACGTTTGCGTGATGAAAATTAATTCTGAAGAACCA TTTTCTTATATCTCTTTAGACAAAATAAGAGATGAATTAAAGCAAGGCGAATCCGTAGTT ACATATGGACAGATACAAGATTTTGATAAAGAAACTTATAGTATGTCTGGTTCACCATTA CTTGATCAGTATGGGAACCTTGTAGGAATGATACAAAAAAAAATCGACAATTATGGCTTG GCTTTACCCGCGAATATTCTAAAAAATGTAGCTATTCATTTACAAAATAAGGGAGTATAT AAGGAACCATTTTTAGGTATTGTGTTTAGAGAGAAGGCCCTCATAATTCAAAATTCCAGA TCTCTTACAAAAGAGTTGAAAATTTCCAGCATTTTAGCTAACTCATCAGCTGATCTGGGC AACTTGAAAAAAGAAGATATAATTTCAAAGATTAACAATAAAGACATCGAAAGCATTTGT GATGTACACGAAATTATCAATAGTACAAGTGATAGATATATAAATGTTGACGGCATTCGA AATGACAAAAAATTTAAAACACAGATAAAACTATGGTGA
  • Download Fasta

  • Fasta :-

    MKKSNLSLFKSIVKHSWRASLFCYSTIFIHSSVNTLLASYNDKEKGVYKDKRKNNFDFFA TISLKIIPISYCSCQLVYKCDNNNALPTETEYNNLELFKRVFFKLIQYEYFIIHKIIRCI NEFIIFVLYSLANFYLYFHSIFFNICNLLSKIYHGESNNGSLHAYPNIPYNIINSFVTIH KIYEHNKIPLKHDFKNDQLEYMGSEFIYDKRGYILTAAHNITNLEDKFVVKNNNGLYFAT LLGLHKGSDVCVMKINSEEPFSYISLDKIRDELKQGESVVTYGQIQDFDKETYSMSGSPL LDQYGNLVGMIQKKIDNYGLALPANILKNVAIHLQNKGVYKEPFLGIVFREKALIIQNSR SLTKELKISSILANSSADLGNLKKEDIISKINNKDIESICDVHEIINSTSDRYINVDGIR NDKKFKTQIKLW

  • title: protein binding site
  • coordinates: F344,L345,G346,I347,F349,S398,I399,V402,H403
No Results
No Results
IDSitePeptideScoreMethod
PBANKA_142530016 SIVKHSWRAS0.994unsp

PBANKA_142530      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India