PCHAS_0203800 | proteasome subunit beta type-3, putative

_IDPredictionOTHERSPmTPCS_Position
PCHAS_0203800OTHER0.9345170.0465860.018897
No Results

  • Fasta :-

    >PCHAS_0203800 MGSIFNYNGGCVLGMSGSQCVAIACDLRLGSNSFTTVSTNFTKIFKINDHIYVGLSGLAT DIQSLYELLRYRVNLYQIRQETEMNIDCFSNMLSNILYSNRFSPYFVNPIVVGFKVTTQV DENGNKTNVYEPYLNAYDLIGAKCETNDFVVNGVSNEQLYGMCESMYIKDQDENGLFETV SQCLLSALDRDCLSGWGAEVYVLTPDKIIKKKLKARMD
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_0203800.fa Sequence name : PCHAS_0203800 Sequence length : 218 VALUES OF COMPUTED PARAMETERS Coef20 : 3.397 CoefTot : -1.491 ChDiff : -6 ZoneTo : 48 KR : 3 DE : 1 CleavSite : 30 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.459 1.418 0.454 0.480 MesoH : -0.254 0.365 -0.240 0.219 MuHd_075 : 20.887 11.264 6.550 4.972 MuHd_095 : 38.816 25.789 10.317 9.867 MuHd_100 : 34.095 24.548 9.595 9.219 MuHd_105 : 31.767 24.972 9.666 8.473 Hmax_075 : 10.412 9.100 5.460 3.938 Hmax_095 : 18.550 17.238 3.182 6.563 Hmax_100 : 18.400 16.900 3.014 6.400 Hmax_105 : 18.000 15.500 2.735 5.740 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7759 0.2241 DFMC : 0.8054 0.1946
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 218 PCHAS_0203800 MGSIFNYNGGCVLGMSGSQCVAIACDLRLGSNSFTTVSTNFTKIFKINDHIYVGLSGLATDIQSLYELLRYRVNLYQIRQ 80 ETEMNIDCFSNMLSNILYSNRFSPYFVNPIVVGFKVTTQVDENGNKTNVYEPYLNAYDLIGAKCETNDFVVNGVSNEQLY 160 GMCESMYIKDQDENGLFETVSQCLLSALDRDCLSGWGAEVYVLTPDKIIKKKLKARMD 240 ................................................................................ 80 ................................................................................ 160 .......................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_0203800 28 AIACDLR|LG 0.085 . PCHAS_0203800 43 VSTNFTK|IF 0.062 . PCHAS_0203800 46 NFTKIFK|IN 0.063 . PCHAS_0203800 70 SLYELLR|YR 0.071 . PCHAS_0203800 72 YELLRYR|VN 0.072 . PCHAS_0203800 79 VNLYQIR|QE 0.074 . PCHAS_0203800 101 NILYSNR|FS 0.076 . PCHAS_0203800 115 PIVVGFK|VT 0.064 . PCHAS_0203800 126 VDENGNK|TN 0.053 . PCHAS_0203800 143 YDLIGAK|CE 0.054 . PCHAS_0203800 169 CESMYIK|DQ 0.077 . PCHAS_0203800 190 LLSALDR|DC 0.119 . PCHAS_0203800 207 YVLTPDK|II 0.063 . PCHAS_0203800 210 TPDKIIK|KK 0.069 . PCHAS_0203800 211 PDKIIKK|KL 0.089 . PCHAS_0203800 212 DKIIKKK|LK 0.094 . PCHAS_0203800 214 IIKKKLK|AR 0.074 . PCHAS_0203800 216 KKKLKAR|MD 0.125 . ____________________________^_________________

  • Fasta :-

    >PCHAS_0203800 ATGGGATCTATATTTAATTATAATGGTGGTTGCGTTTTAGGAATGAGCGGGTCGCAATGT GTCGCAATAGCATGTGACCTTCGTCTTGGATCAAATAGTTTTACAACCGTTAGTACGAAT TTTACAAAAATCTTTAAAATCAATGATCATATATATGTAGGGTTATCAGGTTTAGCGACA GATATACAATCATTATATGAATTGTTGAGATATAGAGTTAATTTATATCAAATCAGGCAA GAAACAGAAATGAATATAGATTGCTTTTCTAATATGTTATCAAATATTTTATATTCAAAT AGATTTTCACCATATTTTGTAAATCCAATTGTGGTTGGATTTAAAGTAACTACACAAGTA GATGAAAACGGAAACAAAACAAATGTATACGAACCATATTTAAATGCATACGATTTAATT GGTGCTAAATGTGAAACCAACGATTTTGTTGTTAACGGAGTATCAAACGAGCAACTATAC GGAATGTGCGAATCGATGTACATAAAGGACCAGGATGAGAACGGGCTGTTTGAGACCGTT TCCCAATGCCTACTAAGCGCACTAGATCGTGATTGCTTATCTGGATGGGGTGCCGAAGTT TACGTACTAACACCGGATAAAATAATAAAAAAGAAACTTAAAGCAAGAATGGATTAA
  • Download Fasta

  • Fasta :-

    MGSIFNYNGGCVLGMSGSQCVAIACDLRLGSNSFTTVSTNFTKIFKINDHIYVGLSGLAT DIQSLYELLRYRVNLYQIRQETEMNIDCFSNMLSNILYSNRFSPYFVNPIVVGFKVTTQV DENGNKTNVYEPYLNAYDLIGAKCETNDFVVNGVSNEQLYGMCESMYIKDQDENGLFETV SQCLLSALDRDCLSGWGAEVYVLTPDKIIKKKLKARMD

  • title: active site
  • coordinates: G10,D26,R28,K43,V154,D191,S194,G195
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PCHAS_020380      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India