PCHAS_0209900 | proteasome subunit alpha type-5, putative

_IDPredictionOTHERSPmTPCS_Position
PCHAS_0209900OTHER0.9996010.0001700.000229
No Results

  • Fasta :-

    >PCHAS_0209900 MFSTRSEYDRGVNTFSPEGRLFQVEYALGAIKLGSTAIGICVDDGVILASERRIASPLIE KDSIEKLLPIDDHIGCAMSGLMADARTLIDHARVECNHYKFVYNENINIKSCVELISELA LDFSNLSDSKRKKIMSRPFGVALLIGGVDKNGPCLWYTEPSGTNTRFLAASIGSAQEGAE LLLQENYNKNMSFQEAEILALTVLRQVMEDKLSSSNVEIAAIKKSDQTFYKYKPDDITKI IDSLPSPIYPTIDMTA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_0209900.fa Sequence name : PCHAS_0209900 Sequence length : 256 VALUES OF COMPUTED PARAMETERS Coef20 : 3.827 CoefTot : 0.359 ChDiff : -8 ZoneTo : 6 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.153 1.524 0.258 0.566 MesoH : -0.732 0.480 -0.339 0.216 MuHd_075 : 26.581 14.114 5.973 6.050 MuHd_095 : 22.151 12.185 5.897 4.710 MuHd_100 : 16.896 13.422 4.329 4.470 MuHd_105 : 11.946 13.520 3.115 4.358 Hmax_075 : 3.063 1.575 -1.476 2.135 Hmax_095 : 11.800 5.700 0.856 3.450 Hmax_100 : 3.000 3.000 -1.467 2.890 Hmax_105 : -5.775 2.400 -3.727 1.000 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7926 0.2074 DFMC : 0.8257 0.1743
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 256 PCHAS_0209900 MFSTRSEYDRGVNTFSPEGRLFQVEYALGAIKLGSTAIGICVDDGVILASERRIASPLIEKDSIEKLLPIDDHIGCAMSG 80 LMADARTLIDHARVECNHYKFVYNENINIKSCVELISELALDFSNLSDSKRKKIMSRPFGVALLIGGVDKNGPCLWYTEP 160 SGTNTRFLAASIGSAQEGAELLLQENYNKNMSFQEAEILALTVLRQVMEDKLSSSNVEIAAIKKSDQTFYKYKPDDITKI 240 IDSLPSPIYPTIDMTA 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................ 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_0209900 5 --MFSTR|SE 0.129 . PCHAS_0209900 10 TRSEYDR|GV 0.202 . PCHAS_0209900 20 TFSPEGR|LF 0.104 . PCHAS_0209900 32 YALGAIK|LG 0.061 . PCHAS_0209900 52 VILASER|RI 0.068 . PCHAS_0209900 53 ILASERR|IA 0.174 . PCHAS_0209900 61 ASPLIEK|DS 0.062 . PCHAS_0209900 66 EKDSIEK|LL 0.054 . PCHAS_0209900 86 GLMADAR|TL 0.111 . PCHAS_0209900 93 TLIDHAR|VE 0.095 . PCHAS_0209900 100 VECNHYK|FV 0.089 . PCHAS_0209900 110 NENINIK|SC 0.077 . PCHAS_0209900 130 SNLSDSK|RK 0.053 . PCHAS_0209900 131 NLSDSKR|KK 0.256 . PCHAS_0209900 132 LSDSKRK|KI 0.093 . PCHAS_0209900 133 SDSKRKK|IM 0.149 . PCHAS_0209900 137 RKKIMSR|PF 0.131 . PCHAS_0209900 150 LIGGVDK|NG 0.057 . PCHAS_0209900 166 PSGTNTR|FL 0.113 . PCHAS_0209900 189 LQENYNK|NM 0.065 . PCHAS_0209900 205 LALTVLR|QV 0.101 . PCHAS_0209900 211 RQVMEDK|LS 0.065 . PCHAS_0209900 223 VEIAAIK|KS 0.059 . PCHAS_0209900 224 EIAAIKK|SD 0.115 . PCHAS_0209900 231 SDQTFYK|YK 0.073 . PCHAS_0209900 233 QTFYKYK|PD 0.065 . PCHAS_0209900 239 KPDDITK|II 0.064 . ____________________________^_________________

  • Fasta :-

    >PCHAS_0209900 ATGTTTTCAACAAGAAGCGAATATGACAGAGGGGTAAACACCTTCTCTCCAGAAGGTAGA CTCTTTCAAGTAGAATATGCATTAGGAGCTATAAAGCTTGGCAGTACCGCTATAGGCATA TGCGTAGATGATGGAGTAATTTTAGCATCGGAAAGAAGAATTGCTTCCCCTTTAATAGAG AAAGATTCTATAGAAAAATTATTACCTATTGATGATCATATAGGATGTGCAATGAGTGGA TTGATGGCAGATGCAAGAACATTGATTGATCATGCAAGAGTAGAATGCAATCATTATAAA TTTGTATATAATGAGAACATAAATATAAAATCTTGTGTAGAATTAATTTCTGAATTAGCA TTAGATTTTTCAAATTTATCAGATTCTAAAAGAAAAAAAATTATGAGCAGACCTTTTGGT GTTGCTTTATTAATAGGAGGTGTCGATAAGAATGGTCCATGCTTATGGTATACAGAACCT TCTGGAACGAATACCCGATTTTTAGCTGCATCTATTGGATCAGCACAAGAAGGTGCAGAA TTATTATTACAAGAAAATTATAATAAAAATATGAGTTTTCAAGAGGCAGAAATTTTAGCC CTTACTGTATTAAGACAAGTAATGGAAGATAAATTATCATCCTCAAATGTTGAAATAGCT GCAATCAAAAAATCAGATCAAACATTTTATAAATACAAACCAGATGATATTACGAAAATT ATTGATTCATTACCTTCTCCAATATACCCAACAATTGATATGACAGCATAA
  • Download Fasta

  • Fasta :-

    MFSTRSEYDRGVNTFSPEGRLFQVEYALGAIKLGSTAIGICVDDGVILASERRIASPLIE KDSIEKLLPIDDHIGCAMSGLMADARTLIDHARVECNHYKFVYNENINIKSCVELISELA LDFSNLSDSKRKKIMSRPFGVALLIGGVDKNGPCLWYTEPSGTNTRFLAASIGSAQEGAE LLLQENYNKNMSFQEAEILALTVLRQVMEDKLSSSNVEIAAIKKSDQTFYKYKPDDITKI IDSLPSPIYPTIDMTA

  • title: active site
  • coordinates: S35,E51,R53,K66,S174
No Results
No Results
No Results

PCHAS_020990      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India