PCHAS_0410600 | plasmepsin VI, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0004190      

  • Computed_GO_Functions:  aspartic-type endopeptidase activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PCHAS_0410600OTHER0.5392640.4278270.032909
No Results

  • Fasta :-

    >PCHAS_0410600 MPNFRIKSYLFLYLSFLLFFEIITIFHVSSIRISTVLKNDDNKKKNFSTPLVDENKKYLF NEIKLNNRFKNDIKGYIQNINNFHSIIESKIPNSLLYVHEDLINFHNSQFIGDIEIGNPP QSFKVVFDTGSSNFAIPSTKCVKGGCTLHNKFDAKKSRTFMSTLKNKKESIYTYVQYGTG KSILEHGYDDVYMKGLKINKQCIGLIIEESMHPFSDLPFDGIVGLGFSDPDNSFQAKYSK SLIETIKEQNLLQQNIFSFYVPKELEKPGAITFGRANSKYAVEGEKIEWFPVISMYFWEI NLLGILLPDKNFEICSNKKCRAAIDTGSSLLTGPSSLMQPLIENINLEKDCSNISSLPII SFVLKNVEGKTVTLDFTPDDYILQENSEEDNSSQCVIGLMSLDIPPPRGPIFIFGNVFIR KYYTIFDNDHKLVGVVKSNHDF
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_0410600.fa Sequence name : PCHAS_0410600 Sequence length : 442 VALUES OF COMPUTED PARAMETERS Coef20 : 4.529 CoefTot : 0.029 ChDiff : -2 ZoneTo : 39 KR : 4 DE : 1 CleavSite : 34 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.041 2.365 0.302 0.882 MesoH : -0.552 0.340 -0.350 0.227 MuHd_075 : 18.471 13.327 4.928 3.440 MuHd_095 : 23.782 16.936 6.775 4.943 MuHd_100 : 24.262 18.151 7.122 5.741 MuHd_105 : 25.490 16.774 7.491 5.232 Hmax_075 : 16.000 16.917 3.306 5.682 Hmax_095 : 18.113 23.500 4.565 6.422 Hmax_100 : 19.000 23.500 4.565 7.420 Hmax_105 : 18.900 22.983 4.599 7.373 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9147 0.0853 DFMC : 0.9155 0.0845
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 442 PCHAS_0410600 MPNFRIKSYLFLYLSFLLFFEIITIFHVSSIRISTVLKNDDNKKKNFSTPLVDENKKYLFNEIKLNNRFKNDIKGYIQNI 80 NNFHSIIESKIPNSLLYVHEDLINFHNSQFIGDIEIGNPPQSFKVVFDTGSSNFAIPSTKCVKGGCTLHNKFDAKKSRTF 160 MSTLKNKKESIYTYVQYGTGKSILEHGYDDVYMKGLKINKQCIGLIIEESMHPFSDLPFDGIVGLGFSDPDNSFQAKYSK 240 SLIETIKEQNLLQQNIFSFYVPKELEKPGAITFGRANSKYAVEGEKIEWFPVISMYFWEINLLGILLPDKNFEICSNKKC 320 RAAIDTGSSLLTGPSSLMQPLIENINLEKDCSNISSLPIISFVLKNVEGKTVTLDFTPDDYILQENSEEDNSSQCVIGLM 400 SLDIPPPRGPIFIFGNVFIRKYYTIFDNDHKLVGVVKSNHDF 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 .......................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_0410600 5 --MPNFR|IK 0.083 . PCHAS_0410600 7 MPNFRIK|SY 0.085 . PCHAS_0410600 32 FHVSSIR|IS 0.073 . PCHAS_0410600 38 RISTVLK|ND 0.070 . PCHAS_0410600 43 LKNDDNK|KK 0.063 . PCHAS_0410600 44 KNDDNKK|KN 0.082 . PCHAS_0410600 45 NDDNKKK|NF 0.127 . PCHAS_0410600 56 PLVDENK|KY 0.056 . PCHAS_0410600 57 LVDENKK|YL 0.093 . PCHAS_0410600 64 YLFNEIK|LN 0.062 . PCHAS_0410600 68 EIKLNNR|FK 0.086 . PCHAS_0410600 70 KLNNRFK|ND 0.083 . PCHAS_0410600 74 RFKNDIK|GY 0.072 . PCHAS_0410600 90 HSIIESK|IP 0.062 . PCHAS_0410600 124 NPPQSFK|VV 0.088 . PCHAS_0410600 140 FAIPSTK|CV 0.080 . PCHAS_0410600 143 PSTKCVK|GG 0.061 . PCHAS_0410600 151 GCTLHNK|FD 0.066 . PCHAS_0410600 155 HNKFDAK|KS 0.074 . PCHAS_0410600 156 NKFDAKK|SR 0.100 . PCHAS_0410600 158 FDAKKSR|TF 0.112 . PCHAS_0410600 165 TFMSTLK|NK 0.060 . PCHAS_0410600 167 MSTLKNK|KE 0.065 . PCHAS_0410600 168 STLKNKK|ES 0.079 . PCHAS_0410600 181 VQYGTGK|SI 0.081 . PCHAS_0410600 194 YDDVYMK|GL 0.066 . PCHAS_0410600 197 VYMKGLK|IN 0.057 . PCHAS_0410600 200 KGLKINK|QC 0.057 . PCHAS_0410600 237 DNSFQAK|YS 0.090 . PCHAS_0410600 240 FQAKYSK|SL 0.085 . PCHAS_0410600 247 SLIETIK|EQ 0.061 . PCHAS_0410600 263 FSFYVPK|EL 0.073 . PCHAS_0410600 267 VPKELEK|PG 0.057 . PCHAS_0410600 275 GAITFGR|AN 0.119 . PCHAS_0410600 279 FGRANSK|YA 0.085 . PCHAS_0410600 286 YAVEGEK|IE 0.053 . PCHAS_0410600 310 GILLPDK|NF 0.056 . PCHAS_0410600 318 FEICSNK|KC 0.069 . PCHAS_0410600 319 EICSNKK|CR 0.086 . PCHAS_0410600 321 CSNKKCR|AA 0.226 . PCHAS_0410600 349 ENINLEK|DC 0.066 . PCHAS_0410600 365 IISFVLK|NV 0.110 . PCHAS_0410600 370 LKNVEGK|TV 0.077 . PCHAS_0410600 408 LDIPPPR|GP 0.096 . PCHAS_0410600 420 FGNVFIR|KY 0.102 . PCHAS_0410600 421 GNVFIRK|YY 0.095 . PCHAS_0410600 431 IFDNDHK|LV 0.075 . PCHAS_0410600 437 KLVGVVK|SN 0.090 . ____________________________^_________________

  • Fasta :-

    >PCHAS_0410600 ATGCCAAATTTTCGCATTAAGTCTTATTTGTTTTTATATTTATCCTTTTTATTATTTTTT GAGATAATCACAATATTCCATGTTTCATCGATAAGAATATCTACTGTTTTAAAAAATGAT GACAACAAAAAAAAAAATTTTAGCACTCCATTGGTGGACGAAAATAAAAAATACCTTTTC AATGAAATAAAATTAAATAATAGATTTAAAAATGATATAAAAGGATATATTCAAAATATA AACAATTTCCATTCAATAATAGAAAGTAAAATACCAAATTCATTATTATATGTTCATGAA GACTTAATTAATTTTCACAATAGTCAATTTATTGGTGATATTGAAATTGGTAATCCTCCT CAAAGTTTTAAGGTTGTCTTTGATACGGGATCCAGTAACTTTGCAATTCCATCAACGAAA TGTGTCAAAGGAGGATGTACTTTACACAATAAATTTGATGCCAAGAAATCACGGACTTTT ATGAGCACCTTGAAAAATAAAAAAGAATCCATCTATACGTACGTCCAATATGGAACAGGA AAAAGCATTCTCGAGCATGGATACGATGATGTGTATATGAAAGGATTAAAAATTAATAAA CAATGTATAGGATTAATAATCGAAGAATCCATGCACCCCTTCTCGGACTTACCGTTTGAC GGAATTGTTGGATTAGGATTTTCTGATCCGGATAATAGTTTCCAAGCCAAATATTCTAAG TCCTTAATCGAAACAATCAAAGAGCAGAATCTTCTACAACAAAATATTTTTTCATTTTAT GTGCCAAAGGAGTTGGAAAAACCAGGGGCAATTACATTTGGAAGGGCTAACAGCAAATAT GCTGTAGAAGGAGAAAAAATTGAATGGTTTCCCGTTATATCAATGTACTTTTGGGAAATA AATTTATTAGGAATATTGCTTCCAGATAAAAATTTCGAAATATGTTCAAATAAAAAATGC AGAGCAGCAATTGATACCGGTTCCAGTTTGCTAACTGGGCCATCGAGCCTTATGCAGCCA TTAATAGAAAACATAAATTTAGAAAAGGATTGTTCTAATATAAGTAGTTTACCAATTATT TCATTTGTTTTAAAAAATGTCGAAGGGAAAACAGTCACACTAGATTTTACTCCAGACGAT TATATTTTACAAGAAAATAGCGAAGAGGATAATTCTTCTCAATGCGTAATTGGATTGATG TCCCTTGACATTCCACCACCCCGAGGCCCTATTTTCATTTTTGGCAATGTTTTCATTAGA AAGTATTACACAATATTTGACAATGACCATAAGCTCGTTGGAGTAGTTAAAAGCAATCAC GATTTTTAA
  • Download Fasta

  • Fasta :-

    MPNFRIKSYLFLYLSFLLFFEIITIFHVSSIRISTVLKNDDNKKKNFSTPLVDENKKYLF NEIKLNNRFKNDIKGYIQNINNFHSIIESKIPNSLLYVHEDLINFHNSQFIGDIEIGNPP QSFKVVFDTGSSNFAIPSTKCVKGGCTLHNKFDAKKSRTFMSTLKNKKESIYTYVQYGTG KSILEHGYDDVYMKGLKINKQCIGLIIEESMHPFSDLPFDGIVGLGFSDPDNSFQAKYSK SLIETIKEQNLLQQNIFSFYVPKELEKPGAITFGRANSKYAVEGEKIEWFPVISMYFWEI NLLGILLPDKNFEICSNKKCRAAIDTGSSLLTGPSSLMQPLIENINLEKDCSNISSLPII SFVLKNVEGKTVTLDFTPDDYILQENSEEDNSSQCVIGLMSLDIPPPRGPIFIFGNVFIR KYYTIFDNDHKLVGVVKSNHDF

    No Results
  • title: inhibitor binding site
  • coordinates: D128,G130,S132,Y174,V175,Q176,I222
No Results
No Results
IDSitePeptideScoreMethod
PCHAS_0410600387 SLQENSEEDN0.996unsp

PCHAS_041060      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India