PCHAS_0420600 | lysophospholipase, putative

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_IDPredictionOTHERSPmTPCS_Position
PCHAS_0420600OTHER0.9993530.0006330.000014
No Results

  • Fasta :-

    >PCHAS_0420600 MVIEGVELNNNELRNTTCNLDGDPKIGWLCNKNGLLLKTYAWIVKNPIGNILLIHGFETH TRANFMRKNLKMSNNNEGLVVGDNNYYIYKDSWIEKFNQNSYSVYALDLQGHGGSQSLGK LRVTFNCFDDLVDDVIQYMNQIYNETSSDNQKNDGSHNIATTKKKRIPMYIIGYSMGANI ALRILQLLKKEKEDRIKAKNSNKYKKSKTMLCSSNDINEIGNGMYDMNNSNDYDFDNSCA SGNHKGRSDYLDKLNIKGCVSISGMVRVKSILDSENKSFWQYFFPIFIFMSYVMPHIEIS SESQYKKLGRFGNIYKHYILPNINGSKFKWWSECVKATIKLDRDVNYMPKDIPLLFVHSK DDGVCSYVGMILFYNKLNVNDKELYTVNGMNHYTTRRPGNEDILKKIIDWICNLRKNDED EI
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_0420600.fa Sequence name : PCHAS_0420600 Sequence length : 422 VALUES OF COMPUTED PARAMETERS Coef20 : 3.724 CoefTot : 0.000 ChDiff : 7 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.853 1.482 0.054 0.704 MesoH : -0.710 0.059 -0.488 0.168 MuHd_075 : 15.105 15.533 4.960 4.747 MuHd_095 : 25.089 13.641 6.111 3.962 MuHd_100 : 27.154 14.709 6.088 4.993 MuHd_105 : 24.895 14.149 5.807 5.185 Hmax_075 : -1.100 9.713 -0.195 3.170 Hmax_095 : 8.750 9.188 0.181 3.097 Hmax_100 : 6.600 9.000 0.071 3.090 Hmax_105 : 8.750 14.583 1.126 4.515 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8811 0.1189 DFMC : 0.8708 0.1292
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 422 PCHAS_0420600 MVIEGVELNNNELRNTTCNLDGDPKIGWLCNKNGLLLKTYAWIVKNPIGNILLIHGFETHTRANFMRKNLKMSNNNEGLV 80 VGDNNYYIYKDSWIEKFNQNSYSVYALDLQGHGGSQSLGKLRVTFNCFDDLVDDVIQYMNQIYNETSSDNQKNDGSHNIA 160 TTKKKRIPMYIIGYSMGANIALRILQLLKKEKEDRIKAKNSNKYKKSKTMLCSSNDINEIGNGMYDMNNSNDYDFDNSCA 240 SGNHKGRSDYLDKLNIKGCVSISGMVRVKSILDSENKSFWQYFFPIFIFMSYVMPHIEISSESQYKKLGRFGNIYKHYIL 320 PNINGSKFKWWSECVKATIKLDRDVNYMPKDIPLLFVHSKDDGVCSYVGMILFYNKLNVNDKELYTVNGMNHYTTRRPGN 400 EDILKKIIDWICNLRKNDEDEI 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ...................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_0420600 14 LNNNELR|NT 0.108 . PCHAS_0420600 25 NLDGDPK|IG 0.056 . PCHAS_0420600 32 IGWLCNK|NG 0.053 . PCHAS_0420600 38 KNGLLLK|TY 0.062 . PCHAS_0420600 45 TYAWIVK|NP 0.062 . PCHAS_0420600 62 GFETHTR|AN 0.085 . PCHAS_0420600 67 TRANFMR|KN 0.126 . PCHAS_0420600 68 RANFMRK|NL 0.102 . PCHAS_0420600 71 FMRKNLK|MS 0.067 . PCHAS_0420600 90 NNYYIYK|DS 0.074 . PCHAS_0420600 96 KDSWIEK|FN 0.076 . PCHAS_0420600 120 GSQSLGK|LR 0.060 . PCHAS_0420600 122 QSLGKLR|VT 0.100 . PCHAS_0420600 152 TSSDNQK|ND 0.076 . PCHAS_0420600 163 HNIATTK|KK 0.062 . PCHAS_0420600 164 NIATTKK|KR 0.088 . PCHAS_0420600 165 IATTKKK|RI 0.107 . PCHAS_0420600 166 ATTKKKR|IP 0.171 . PCHAS_0420600 183 GANIALR|IL 0.078 . PCHAS_0420600 189 RILQLLK|KE 0.051 . PCHAS_0420600 190 ILQLLKK|EK 0.101 . PCHAS_0420600 192 QLLKKEK|ED 0.062 . PCHAS_0420600 195 KKEKEDR|IK 0.081 . PCHAS_0420600 197 EKEDRIK|AK 0.060 . PCHAS_0420600 199 EDRIKAK|NS 0.091 . PCHAS_0420600 203 KAKNSNK|YK 0.066 . PCHAS_0420600 205 KNSNKYK|KS 0.093 . PCHAS_0420600 206 NSNKYKK|SK 0.197 . PCHAS_0420600 208 NKYKKSK|TM 0.065 . PCHAS_0420600 245 CASGNHK|GR 0.083 . PCHAS_0420600 247 SGNHKGR|SD 0.136 . PCHAS_0420600 253 RSDYLDK|LN 0.063 . PCHAS_0420600 257 LDKLNIK|GC 0.060 . PCHAS_0420600 267 SISGMVR|VK 0.088 . PCHAS_0420600 269 SGMVRVK|SI 0.105 . PCHAS_0420600 277 ILDSENK|SF 0.077 . PCHAS_0420600 306 SSESQYK|KL 0.080 . PCHAS_0420600 307 SESQYKK|LG 0.101 . PCHAS_0420600 310 QYKKLGR|FG 0.101 . PCHAS_0420600 316 RFGNIYK|HY 0.058 . PCHAS_0420600 327 PNINGSK|FK 0.069 . PCHAS_0420600 329 INGSKFK|WW 0.095 . PCHAS_0420600 336 WWSECVK|AT 0.077 . PCHAS_0420600 340 CVKATIK|LD 0.059 . PCHAS_0420600 343 ATIKLDR|DV 0.167 . PCHAS_0420600 350 DVNYMPK|DI 0.070 . PCHAS_0420600 360 LLFVHSK|DD 0.081 . PCHAS_0420600 376 MILFYNK|LN 0.053 . PCHAS_0420600 382 KLNVNDK|EL 0.077 . PCHAS_0420600 396 MNHYTTR|RP 0.101 . PCHAS_0420600 397 NHYTTRR|PG 0.092 . PCHAS_0420600 405 GNEDILK|KI 0.066 . PCHAS_0420600 406 NEDILKK|II 0.106 . PCHAS_0420600 415 DWICNLR|KN 0.078 . PCHAS_0420600 416 WICNLRK|ND 0.089 . ____________________________^_________________

  • Fasta :-

    >PCHAS_0420600 ATGGTGATAGAAGGAGTTGAATTGAATAATAATGAATTAAGAAATACAACATGTAATTTA GATGGCGATCCTAAGATAGGTTGGTTATGTAATAAAAATGGTTTACTTTTAAAAACATAC GCGTGGATAGTTAAAAACCCTATAGGAAATATATTGTTAATACATGGATTCGAAACCCAT ACTCGAGCAAATTTTATGAGAAAAAATTTAAAAATGTCAAATAACAATGAAGGCTTAGTA GTAGGCGATAATAATTACTATATTTATAAAGATAGTTGGATTGAAAAATTTAATCAAAAT AGTTATTCAGTATACGCGCTAGATTTGCAAGGACATGGGGGATCACAATCATTGGGAAAA TTAAGAGTCACTTTTAATTGTTTTGATGATTTAGTTGATGATGTAATACAATATATGAAT CAAATTTACAATGAAACCTCAAGTGATAATCAAAAAAATGACGGATCTCATAATATAGCG ACAACTAAAAAAAAAAGAATTCCTATGTATATTATTGGTTATTCGATGGGAGCAAATATT GCCTTAAGGATATTACAATTATTAAAGAAAGAAAAAGAAGATAGAATTAAGGCTAAAAAC TCAAATAAATATAAAAAATCAAAAACTATGTTATGCAGCTCTAATGATATTAATGAAATT GGTAATGGTATGTATGATATGAATAATTCTAATGATTATGATTTCGATAATTCATGTGCT AGTGGCAACCATAAAGGACGATCTGATTATTTAGATAAATTAAATATTAAAGGTTGCGTA TCTATATCTGGTATGGTGAGAGTAAAATCAATATTGGATTCTGAAAACAAATCATTTTGG CAATATTTTTTCCCCATATTCATCTTCATGTCTTATGTCATGCCTCATATAGAAATTTCG TCAGAATCACAGTATAAAAAGTTAGGGCGTTTTGGTAATATATATAAGCATTATATATTA CCAAATATTAATGGATCAAAATTTAAATGGTGGTCTGAATGCGTAAAAGCAACAATCAAA TTGGATCGTGATGTTAATTATATGCCAAAAGATATTCCTTTATTATTTGTTCATTCAAAA GATGATGGTGTGTGTTCTTATGTTGGAATGATCTTGTTTTATAATAAATTAAATGTTAAT GATAAAGAATTATATACTGTTAATGGTATGAATCATTATACAACGAGAAGACCAGGAAAT GAAGACATTTTAAAAAAAATTATTGATTGGATTTGTAATTTAAGAAAGAATGATGAAGAC GAAATATAA
  • Download Fasta

  • Fasta :-

    MVIEGVELNNNELRNTTCNLDGDPKIGWLCNKNGLLLKTYAWIVKNPIGNILLIHGFETH TRANFMRKNLKMSNNNEGLVVGDNNYYIYKDSWIEKFNQNSYSVYALDLQGHGGSQSLGK LRVTFNCFDDLVDDVIQYMNQIYNETSSDNQKNDGSHNIATTKKKRIPMYIIGYSMGANI ALRILQLLKKEKEDRIKAKNSNKYKKSKTMLCSSNDINEIGNGMYDMNNSNDYDFDNSCA SGNHKGRSDYLDKLNIKGCVSISGMVRVKSILDSENKSFWQYFFPIFIFMSYVMPHIEIS SESQYKKLGRFGNIYKHYILPNINGSKFKWWSECVKATIKLDRDVNYMPKDIPLLFVHSK DDGVCSYVGMILFYNKLNVNDKELYTVNGMNHYTTRRPGNEDILKKIIDWICNLRKNDED EI

    No Results
No Results
No Results
IDSitePeptideScoreMethod
PCHAS_0420600270 SVRVKSILDS0.997unsp

PCHAS_042060      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India