PCHAS_0516400 | DER1-like protein, putative

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_IDPredictionOTHERSPmTPCS_Position
PCHAS_0516400OTHER0.9999740.0000060.000020
No Results

  • Fasta :-

    >PCHAS_0516400 MDLSGPEVWYNNLPNVTKYMILIIFFVTLLITCNLLNIVHILLDWNLIYNKYQIWRIFFN FFYVGNFSLSWVFFMSLFAQFSSSLEKNEMFSTPGSYLYFITIHCVFLSVISILFYWPRG YPFLGNSLLFAIIYYWSRREAWSHVSIYFFTVKGYQLPFALIFLHLIMGQSLWGDIMGLL SGHFYYFLREILPREGGPNLVEKTPKIFEKIMIKLGNFTINNGVRNSYTRYGYGHTNNQP PTTNMGSRRVFIGRGMRLGGN
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_0516400.fa Sequence name : PCHAS_0516400 Sequence length : 261 VALUES OF COMPUTED PARAMETERS Coef20 : 3.171 CoefTot : 0.000 ChDiff : 9 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.318 2.724 0.492 0.862 MesoH : 0.936 1.110 -0.059 0.514 MuHd_075 : 17.691 9.459 4.004 2.158 MuHd_095 : 27.614 15.980 7.043 5.159 MuHd_100 : 18.297 11.692 5.379 4.632 MuHd_105 : 16.818 12.016 6.043 4.552 Hmax_075 : 3.100 5.500 -2.106 2.550 Hmax_095 : 9.362 7.525 -0.512 3.850 Hmax_100 : 1.900 2.100 -2.208 2.660 Hmax_105 : 10.400 9.567 1.222 4.440 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9574 0.0426 DFMC : 0.9779 0.0221
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 261 PCHAS_0516400 MDLSGPEVWYNNLPNVTKYMILIIFFVTLLITCNLLNIVHILLDWNLIYNKYQIWRIFFNFFYVGNFSLSWVFFMSLFAQ 80 FSSSLEKNEMFSTPGSYLYFITIHCVFLSVISILFYWPRGYPFLGNSLLFAIIYYWSRREAWSHVSIYFFTVKGYQLPFA 160 LIFLHLIMGQSLWGDIMGLLSGHFYYFLREILPREGGPNLVEKTPKIFEKIMIKLGNFTINNGVRNSYTRYGYGHTNNQP 240 PTTNMGSRRVFIGRGMRLGGN 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ..................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_0516400 18 NLPNVTK|YM 0.067 . PCHAS_0516400 51 WNLIYNK|YQ 0.057 . PCHAS_0516400 56 NKYQIWR|IF 0.087 . PCHAS_0516400 87 FSSSLEK|NE 0.065 . PCHAS_0516400 119 ILFYWPR|GY 0.096 . PCHAS_0516400 138 IIYYWSR|RE 0.072 . PCHAS_0516400 139 IYYWSRR|EA 0.162 . PCHAS_0516400 153 IYFFTVK|GY 0.058 . PCHAS_0516400 189 HFYYFLR|EI 0.098 . PCHAS_0516400 194 LREILPR|EG 0.119 . PCHAS_0516400 203 GPNLVEK|TP 0.076 . PCHAS_0516400 206 LVEKTPK|IF 0.075 . PCHAS_0516400 210 TPKIFEK|IM 0.082 . PCHAS_0516400 214 FEKIMIK|LG 0.054 . PCHAS_0516400 225 TINNGVR|NS 0.089 . PCHAS_0516400 230 VRNSYTR|YG 0.107 . PCHAS_0516400 248 TTNMGSR|RV 0.195 . PCHAS_0516400 249 TNMGSRR|VF 0.181 . PCHAS_0516400 254 RRVFIGR|GM 0.121 . PCHAS_0516400 257 FIGRGMR|LG 0.181 . ____________________________^_________________

  • Fasta :-

    >PCHAS_0516400 ATGGATTTATCGGGCCCAGAAGTTTGGTACAACAATTTGCCAAATGTGACCAAATATATG ATATTAATAATTTTTTTTGTTACTTTATTAATAACATGTAATTTATTAAATATAGTACAC ATATTATTAGATTGGAATTTAATATATAATAAATATCAAATATGGAGAATTTTTTTTAAC TTTTTTTATGTGGGAAATTTCTCACTTTCTTGGGTATTTTTTATGTCGTTGTTTGCTCAA TTCTCATCATCATTGGAAAAAAATGAAATGTTTTCCACACCCGGCTCCTATTTATATTTT ATAACTATTCATTGTGTCTTTCTATCAGTAATAAGTATTCTGTTTTACTGGCCAAGGGGT TATCCATTTTTAGGAAACTCTCTCCTGTTTGCAATAATCTATTATTGGTCTCGAAGAGAA GCATGGAGTCATGTCTCGATTTATTTCTTTACAGTTAAAGGGTATCAATTACCATTTGCC TTAATATTTTTACACCTAATAATGGGCCAATCATTATGGGGAGATATTATGGGACTTTTA TCAGGGCATTTTTATTACTTTTTAAGGGAGATCCTTCCAAGAGAAGGTGGACCTAATCTC GTGGAAAAGACTCCCAAGATATTCGAAAAAATAATGATAAAGCTAGGAAATTTCACAATA AATAACGGAGTAAGAAATAGTTACACCAGATATGGTTATGGGCATACAAATAACCAACCA CCAACAACCAATATGGGTTCACGAAGAGTTTTCATTGGAAGGGGCATGCGATTAGGTGGC AATTGA
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  • Fasta :-

    MDLSGPEVWYNNLPNVTKYMILIIFFVTLLITCNLLNIVHILLDWNLIYNKYQIWRIFFN FFYVGNFSLSWVFFMSLFAQFSSSLEKNEMFSTPGSYLYFITIHCVFLSVISILFYWPRG YPFLGNSLLFAIIYYWSRREAWSHVSIYFFTVKGYQLPFALIFLHLIMGQSLWGDIMGLL SGHFYYFLREILPREGGPNLVEKTPKIFEKIMIKLGNFTINNGVRNSYTRYGYGHTNNQP PTTNMGSRRVFIGRGMRLGGN

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PCHAS_051640      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India