PCHAS_0613700 | ATP-dependent Clp protease proteolytic subunit, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:  GO:0020011      

  • Curated_GO_Components:  apicoplast      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PCHAS_0613700SP0.0329310.9653550.001714CS pos: 17-18. CVC-KK. Pr: 0.8994
No Results

  • Fasta :-

    >PCHAS_0613700 MRIFWIFIINFIYFCVCKKKKHITPSSFIIAQTNNKIRLRNKLRYYDNEYPKQNISIPSL LLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDLENNKIVNLNGITD VISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLKQSYSIIPFNQ ATNIEIQNKEIMNTKKKVIDIIAKNTEKDSNIISEILDRDRYFNAKEASDFNLIDHILEK Q
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_0613700.fa Sequence name : PCHAS_0613700 Sequence length : 241 VALUES OF COMPUTED PARAMETERS Coef20 : 4.713 CoefTot : -1.183 ChDiff : 11 ZoneTo : 46 KR : 10 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.435 2.035 0.296 0.701 MesoH : -0.402 0.391 -0.252 0.230 MuHd_075 : 27.523 18.392 9.095 5.591 MuHd_095 : 27.834 21.900 7.382 6.092 MuHd_100 : 20.900 20.119 7.718 5.163 MuHd_105 : 27.327 20.717 9.562 6.121 Hmax_075 : 17.967 26.833 6.845 6.183 Hmax_095 : 22.400 19.100 -1.466 8.090 Hmax_100 : 11.200 20.800 1.493 4.970 Hmax_105 : 13.650 13.067 3.024 4.422 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1729 0.8271 DFMC : 0.2355 0.7645 This protein is probably imported in mitochondria. f(Ser) = 0.0435 f(Arg) = 0.0870 CMi = 0.22676 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 241 PCHAS_0613700 MRIFWIFIINFIYFCVCKKKKHITPSSFIIAQTNNKIRLRNKLRYYDNEYPKQNISIPSLLLSKRIIFLSSPIYPHISEQ 80 IISQLLYLEYESKRKPIHLYINSTGDLENNKIVNLNGITDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRF 160 SLKNSSFCLKQSYSIIPFNQATNIEIQNKEIMNTKKKVIDIIAKNTEKDSNIISEILDRDRYFNAKEASDFNLIDHILEK 240 Q 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 . 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_0613700 2 -----MR|IF 0.091 . PCHAS_0613700 18 IYFCVCK|KK 0.064 . PCHAS_0613700 19 YFCVCKK|KK 0.088 . PCHAS_0613700 20 FCVCKKK|KH 0.081 . PCHAS_0613700 21 CVCKKKK|HI 0.136 . PCHAS_0613700 36 IAQTNNK|IR 0.052 . PCHAS_0613700 38 QTNNKIR|LR 0.088 . PCHAS_0613700 40 NNKIRLR|NK 0.079 . PCHAS_0613700 42 KIRLRNK|LR 0.057 . PCHAS_0613700 44 RLRNKLR|YY 0.136 . PCHAS_0613700 52 YDNEYPK|QN 0.067 . PCHAS_0613700 64 PSLLLSK|RI 0.051 . PCHAS_0613700 65 SLLLSKR|II 0.147 . PCHAS_0613700 93 YLEYESK|RK 0.057 . PCHAS_0613700 94 LEYESKR|KP 0.119 . PCHAS_0613700 95 EYESKRK|PI 0.085 . PCHAS_0613700 111 GDLENNK|IV 0.065 . PCHAS_0613700 142 YTYCLGK|AY 0.063 . PCHAS_0613700 155 ILASSGK|KG 0.058 . PCHAS_0613700 156 LASSGKK|GY 0.116 . PCHAS_0613700 159 SGKKGYR|FS 0.085 . PCHAS_0613700 163 GYRFSLK|NS 0.084 . PCHAS_0613700 170 NSSFCLK|QS 0.076 . PCHAS_0613700 189 NIEIQNK|EI 0.063 . PCHAS_0613700 195 KEIMNTK|KK 0.058 . PCHAS_0613700 196 EIMNTKK|KV 0.163 . PCHAS_0613700 197 IMNTKKK|VI 0.152 . PCHAS_0613700 204 VIDIIAK|NT 0.063 . PCHAS_0613700 208 IAKNTEK|DS 0.066 . PCHAS_0613700 219 ISEILDR|DR 0.081 . PCHAS_0613700 221 EILDRDR|YF 0.094 . PCHAS_0613700 226 DRYFNAK|EA 0.083 . PCHAS_0613700 240 IDHILEK|Q- 0.069 . ____________________________^_________________

  • Fasta :-

    >PCHAS_0613700 ATGCGTATATTTTGGATATTTATAATAAATTTTATATATTTTTGTGTATGTAAAAAAAAA AAACATATAACTCCATCCAGTTTCATTATAGCTCAAACTAATAACAAGATACGACTTAGA AATAAGTTACGATATTATGATAATGAATATCCAAAACAAAATATTAGTATACCATCTTTG TTGTTATCAAAAAGAATAATATTTTTATCATCTCCTATATATCCTCATATTTCAGAACAG ATAATATCACAGTTATTATATTTAGAATATGAATCCAAAAGAAAGCCAATTCATTTATAT ATTAACAGTACAGGTGATTTAGAAAATAATAAAATAGTTAACTTAAATGGAATTACCGAT GTAATATCAATAGTTGATGTAATTAATTATATATCATCAGATGTGTATACATATTGCTTA GGCAAAGCATATGGTATTGCATGTATATTAGCTAGTAGTGGAAAAAAAGGATATCGATTT TCTTTAAAGAATTCATCGTTTTGTTTAAAGCAATCCTATTCCATTATACCTTTTAATCAA GCAACAAACATTGAAATCCAAAATAAAGAAATAATGAACACTAAAAAAAAAGTTATAGAT ATAATTGCAAAAAACACAGAAAAGGATAGTAATATTATATCAGAAATATTAGATAGGGAT AGATATTTCAATGCAAAGGAAGCATCTGATTTTAATTTGATCGACCATATTTTGGAAAAA CAATAA
  • Download Fasta

  • Fasta :-

    MRIFWIFIINFIYFCVCKKKKHITPSSFIIAQTNNKIRLRNKLRYYDNEYPKQNISIPSL LLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDLENNKIVNLNGITD VISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLKQSYSIIPFNQ ATNIEIQNKEIMNTKKKVIDIIAKNTEKDSNIISEILDRDRYFNAKEASDFNLIDHILEK Q

  • title: active site residues
  • coordinates: G145,K170,D220
No Results
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PCHAS_061370      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India