PCHAS_0730400 | conserved Plasmodium protein, unknown function

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_IDPredictionOTHERSPmTPCS_Position
PCHAS_0730400OTHER0.9999600.0000100.000030
No Results

  • Fasta :-

    >PCHAS_0730400 MNKNTCRSIEQIFEGSTFNKSERKKLAFENEKLNLFFENGIINYSLVELVGSPGSGKTQF ALTLCAEQLIKINKEKKENIVFYVYFNRTFPIQRLTTIIENKLKHNESNYTSYFIDETTT TNNNKDIVRNILTNLYIQKINDENEFFSLFQKDIHSIIKYNKMSLLVIDSFNSILNGNEN LDSYKKYQLYIKMSLILKQISYENNIFIILINSSNINKHYSDFSFNISDYIINSSCSNTV IIFKKTKKNNEQVRKMVIKCSEFLRMYKTLTFQITDSGVDVL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_0730400.fa Sequence name : PCHAS_0730400 Sequence length : 282 VALUES OF COMPUTED PARAMETERS Coef20 : 3.844 CoefTot : -0.134 ChDiff : 7 ZoneTo : 9 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.694 1.247 0.034 0.512 MesoH : -0.853 0.130 -0.494 0.168 MuHd_075 : 6.409 5.590 1.851 3.470 MuHd_095 : 42.486 20.986 10.747 7.326 MuHd_100 : 41.821 20.800 11.180 7.219 MuHd_105 : 38.231 20.432 10.838 7.163 Hmax_075 : -1.300 2.800 -2.610 2.602 Hmax_095 : 14.787 9.362 1.838 3.658 Hmax_100 : 13.000 9.300 1.985 3.630 Hmax_105 : 8.983 11.667 2.413 3.885 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.4645 0.5355 DFMC : 0.7151 0.2849
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 282 PCHAS_0730400 MNKNTCRSIEQIFEGSTFNKSERKKLAFENEKLNLFFENGIINYSLVELVGSPGSGKTQFALTLCAEQLIKINKEKKENI 80 VFYVYFNRTFPIQRLTTIIENKLKHNESNYTSYFIDETTTTNNNKDIVRNILTNLYIQKINDENEFFSLFQKDIHSIIKY 160 NKMSLLVIDSFNSILNGNENLDSYKKYQLYIKMSLILKQISYENNIFIILINSSNINKHYSDFSFNISDYIINSSCSNTV 240 IIFKKTKKNNEQVRKMVIKCSEFLRMYKTLTFQITDSGVDVL 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .......................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_0730400 3 ----MNK|NT 0.070 . PCHAS_0730400 7 MNKNTCR|SI 0.273 . PCHAS_0730400 20 EGSTFNK|SE 0.103 . PCHAS_0730400 23 TFNKSER|KK 0.106 . PCHAS_0730400 24 FNKSERK|KL 0.075 . PCHAS_0730400 25 NKSERKK|LA 0.162 . PCHAS_0730400 32 LAFENEK|LN 0.058 . PCHAS_0730400 57 GSPGSGK|TQ 0.060 . PCHAS_0730400 71 CAEQLIK|IN 0.057 . PCHAS_0730400 74 QLIKINK|EK 0.060 . PCHAS_0730400 76 IKINKEK|KE 0.071 . PCHAS_0730400 77 KINKEKK|EN 0.102 . PCHAS_0730400 88 FYVYFNR|TF 0.081 . PCHAS_0730400 94 RTFPIQR|LT 0.093 . PCHAS_0730400 102 TTIIENK|LK 0.060 . PCHAS_0730400 104 IIENKLK|HN 0.070 . PCHAS_0730400 125 TTTNNNK|DI 0.075 . PCHAS_0730400 129 NNKDIVR|NI 0.085 . PCHAS_0730400 139 TNLYIQK|IN 0.070 . PCHAS_0730400 152 FFSLFQK|DI 0.089 . PCHAS_0730400 159 DIHSIIK|YN 0.067 . PCHAS_0730400 162 SIIKYNK|MS 0.068 . PCHAS_0730400 185 ENLDSYK|KY 0.062 . PCHAS_0730400 186 NLDSYKK|YQ 0.084 . PCHAS_0730400 192 KYQLYIK|MS 0.055 . PCHAS_0730400 198 KMSLILK|QI 0.073 . PCHAS_0730400 218 NSSNINK|HY 0.074 . PCHAS_0730400 244 NTVIIFK|KT 0.062 . PCHAS_0730400 245 TVIIFKK|TK 0.107 . PCHAS_0730400 247 IIFKKTK|KN 0.069 . PCHAS_0730400 248 IFKKTKK|NN 0.148 . PCHAS_0730400 254 KNNEQVR|KM 0.096 . PCHAS_0730400 255 NNEQVRK|MV 0.118 . PCHAS_0730400 259 VRKMVIK|CS 0.077 . PCHAS_0730400 265 KCSEFLR|MY 0.114 . PCHAS_0730400 268 EFLRMYK|TL 0.104 . ____________________________^_________________

  • Fasta :-

    >PCHAS_0730400 ATGAATAAAAATACATGTAGATCAATTGAACAAATATTTGAAGGTTCCACATTTAATAAA TCGGAAAGAAAAAAACTGGCATTTGAAAATGAAAAACTTAATTTATTTTTCGAAAATGGA ATAATTAATTACAGTCTAGTAGAACTAGTAGGAAGTCCAGGAAGTGGGAAAACACAATTT GCTCTTACTTTGTGTGCAGAACAATTGATCAAAATAAATAAAGAAAAAAAAGAAAATATT GTTTTTTATGTTTATTTTAATAGAACTTTTCCAATACAAAGACTTACAACCATAATAGAA AATAAATTAAAACACAACGAAAGTAATTATACCAGTTATTTTATAGATGAAACCACAACA ACAAACAATAATAAGGACATAGTAAGAAACATATTAACAAATTTATATATTCAAAAAATA AATGACGAGAATGAATTCTTTTCATTATTTCAAAAAGATATACACAGCATTATCAAATAT AATAAAATGTCATTACTTGTAATCGATTCATTTAATTCTATACTTAATGGAAATGAAAAT TTAGATAGTTATAAAAAATATCAACTATATATTAAAATGTCTTTAATTTTAAAACAAATA TCATATGAAAATAATATCTTCATCATATTAATTAATAGTTCAAATATTAACAAACATTAC TCAGATTTCTCTTTTAATATATCCGATTATATTATTAATTCCTCATGTTCAAACACAGTT ATTATTTTTAAAAAAACAAAAAAAAATAATGAACAAGTCAGGAAAATGGTTATTAAATGT TCAGAATTTTTACGCATGTATAAAACACTTACATTTCAAATCACAGACTCGGGTGTTGAT GTCCTATGA
  • Download Fasta

  • Fasta :-

    MNKNTCRSIEQIFEGSTFNKSERKKLAFENEKLNLFFENGIINYSLVELVGSPGSGKTQF ALTLCAEQLIKINKEKKENIVFYVYFNRTFPIQRLTTIIENKLKHNESNYTSYFIDETTT TNNNKDIVRNILTNLYIQKINDENEFFSLFQKDIHSIIKYNKMSLLVIDSFNSILNGNEN LDSYKKYQLYIKMSLILKQISYENNIFIILINSSNINKHYSDFSFNISDYIINSSCSNTV IIFKKTKKNNEQVRKMVIKCSEFLRMYKTLTFQITDSGVDVL

  • title: ATP binding site
  • coordinates: S52,G56,K57,T58,Y83,Y85,F86,D169,S170
No Results
No Results
IDSitePeptideScoreMethod
PCHAS_0730400201 SLKQISYENN0.991unsp

PCHAS_073040      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India