PCHAS_0808500 | proteasome subunit alpha type-3, putative

_IDPredictionOTHERSPmTPCS_Position
PCHAS_0808500OTHER0.9994220.0005000.000078
No Results

  • Fasta :-

    >PCHAS_0808500 MAGLSAGYDLSVSTFSPDGRLYQVEYIYKAINNNNTSISLECKDGVISCSINTTLEKNKM IKKNSYNRIYYVNNNIIITYAGLDGDARNIIDRIKSEANNYFLNFHTNIPLHILANRISL YIHAYTLYWHLRPFASSIIISSYDKNEKGEIYCIEPSGACYKYYGVVIGKNKELFKTEIE KKDYKHVSVREALVDIYKFILGSDDHINKDNISHLVNFSWICEESSFESQTIDQEILDDA LNAAVESVNQLN
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_0808500.fa Sequence name : PCHAS_0808500 Sequence length : 252 VALUES OF COMPUTED PARAMETERS Coef20 : 3.707 CoefTot : -0.141 ChDiff : -6 ZoneTo : 8 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.824 0.888 0.034 0.411 MesoH : -0.675 0.156 -0.411 0.210 MuHd_075 : 23.497 12.390 4.947 3.001 MuHd_095 : 9.262 6.029 2.442 2.046 MuHd_100 : 4.187 5.142 0.585 1.413 MuHd_105 : 5.257 2.255 1.425 0.842 Hmax_075 : 15.517 10.267 1.459 3.885 Hmax_095 : 13.000 9.800 1.586 4.440 Hmax_100 : 13.000 9.800 1.283 3.940 Hmax_105 : 10.033 5.250 1.204 3.768 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9176 0.0824 DFMC : 0.8647 0.1353
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 252 PCHAS_0808500 MAGLSAGYDLSVSTFSPDGRLYQVEYIYKAINNNNTSISLECKDGVISCSINTTLEKNKMIKKNSYNRIYYVNNNIIITY 80 AGLDGDARNIIDRIKSEANNYFLNFHTNIPLHILANRISLYIHAYTLYWHLRPFASSIIISSYDKNEKGEIYCIEPSGAC 160 YKYYGVVIGKNKELFKTEIEKKDYKHVSVREALVDIYKFILGSDDHINKDNISHLVNFSWICEESSFESQTIDQEILDDA 240 LNAAVESVNQLN 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............ 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_0808500 20 TFSPDGR|LY 0.091 . PCHAS_0808500 29 QVEYIYK|AI 0.064 . PCHAS_0808500 43 SISLECK|DG 0.071 . PCHAS_0808500 57 INTTLEK|NK 0.059 . PCHAS_0808500 59 TTLEKNK|MI 0.064 . PCHAS_0808500 62 EKNKMIK|KN 0.072 . PCHAS_0808500 63 KNKMIKK|NS 0.083 . PCHAS_0808500 68 KKNSYNR|IY 0.089 . PCHAS_0808500 88 GLDGDAR|NI 0.098 . PCHAS_0808500 93 ARNIIDR|IK 0.129 . PCHAS_0808500 95 NIIDRIK|SE 0.066 . PCHAS_0808500 117 LHILANR|IS 0.076 . PCHAS_0808500 132 TLYWHLR|PF 0.106 . PCHAS_0808500 145 IISSYDK|NE 0.059 . PCHAS_0808500 148 SYDKNEK|GE 0.059 . PCHAS_0808500 162 PSGACYK|YY 0.085 . PCHAS_0808500 170 YGVVIGK|NK 0.058 . PCHAS_0808500 172 VVIGKNK|EL 0.067 . PCHAS_0808500 176 KNKELFK|TE 0.061 . PCHAS_0808500 181 FKTEIEK|KD 0.058 . PCHAS_0808500 182 KTEIEKK|DY 0.108 . PCHAS_0808500 185 IEKKDYK|HV 0.086 . PCHAS_0808500 190 YKHVSVR|EA 0.104 . PCHAS_0808500 198 ALVDIYK|FI 0.069 . PCHAS_0808500 209 SDDHINK|DN 0.072 . ____________________________^_________________

  • Fasta :-

    >PCHAS_0808500 ATGGCAGGATTAAGTGCAGGGTATGACTTATCAGTGTCGACATTTTCACCAGATGGTAGA CTATATCAAGTTGAATATATTTATAAAGCAATAAATAATAACAACACTTCTATAAGTTTA GAATGTAAAGATGGTGTTATTAGCTGTTCTATAAATACAACATTGGAAAAAAATAAAATG ATAAAAAAAAATAGCTATAACAGAATATATTATGTTAATAATAATATTATAATAACATAT GCTGGTTTAGATGGTGATGCAAGAAATATAATTGATAGAATCAAAAGTGAAGCTAATAAT TATTTTTTAAACTTTCATACAAATATACCATTACACATTTTAGCAAATAGAATATCTTTA TATATACATGCCTATACATTATATTGGCATTTGAGACCATTTGCTTCCTCAATAATTATA TCATCTTATGATAAAAATGAAAAAGGTGAAATATATTGCATCGAGCCAAGTGGCGCATGC TACAAATATTACGGCGTAGTAATCGGAAAAAACAAAGAATTATTTAAAACAGAAATTGAA AAGAAAGATTATAAGCATGTAAGTGTTAGAGAAGCCCTAGTAGACATATATAAATTTATT TTAGGTAGCGATGATCATATAAATAAAGATAATATTTCCCACTTAGTAAATTTTTCATGG ATATGTGAAGAATCATCATTTGAATCTCAAACAATTGATCAGGAAATTTTAGATGATGCC TTAAATGCTGCTGTAGAATCAGTTAATCAATTAAATTAA
  • Download Fasta

  • Fasta :-

    MAGLSAGYDLSVSTFSPDGRLYQVEYIYKAINNNNTSISLECKDGVISCSINTTLEKNKM IKKNSYNRIYYVNNNIIITYAGLDGDARNIIDRIKSEANNYFLNFHTNIPLHILANRISL YIHAYTLYWHLRPFASSIIISSYDKNEKGEIYCIEPSGACYKYYGVVIGKNKELFKTEIE KKDYKHVSVREALVDIYKFILGSDDHINKDNISHLVNFSWICEESSFESQTIDQEILDDA LNAAVESVNQLN

  • title: active site
  • coordinates: N35,E56,N58,R68
No Results
No Results
IDSitePeptideScoreMethod
PCHAS_0808500188 SYKHVSVREA0.995unsp

PCHAS_080850      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India