PCHAS_0814200 | 26S proteasome regulatory subunit RPN8, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0005515      

  • Computed_GO_Functions:  protein binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PCHAS_0814200OTHER0.9996910.0000640.000245
No Results

  • Fasta :-

    >PCHAS_0814200 MENDIFEKNINVLERIYLSKHVVVHPIVLLSVVDHYNRIASNTKKRVLGTILGEKIDGVV HITNSYALPFDEDIKDINIFFIDDNYNENLFNMIRKINTREKIVGWYTTGSNIKPNDIFI NEIFYKYHHAPIFLLVNVHTNQSIFPVNAYVAIEKAISNNKFRKTFIHIPVRIGAFEAED VGVEFLLKELKSVSTSTLATKVGDKLSSLKTLISKLHEISEYLNDILQGNIEMNIKILYN LQNVFSLLPDTENPELVEAFMVKNNDIMLNIFIGSITRSVIALHNLINNKIENKINTEKK QLLEDQSIKEKEKAKEK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_0814200.fa Sequence name : PCHAS_0814200 Sequence length : 317 VALUES OF COMPUTED PARAMETERS Coef20 : 3.621 CoefTot : 0.000 ChDiff : -2 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.100 1.771 0.162 0.562 MesoH : -0.727 0.369 -0.483 0.236 MuHd_075 : 13.869 9.521 4.441 2.337 MuHd_095 : 35.687 21.228 9.037 7.957 MuHd_100 : 32.587 19.503 8.554 7.092 MuHd_105 : 28.458 16.764 7.820 5.865 Hmax_075 : -4.433 6.650 -2.604 2.047 Hmax_095 : 2.100 9.275 -1.220 3.920 Hmax_100 : 2.300 12.800 -0.717 4.680 Hmax_105 : 8.400 12.800 0.721 5.343 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8825 0.1175 DFMC : 0.9592 0.0408
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 317 PCHAS_0814200 MENDIFEKNINVLERIYLSKHVVVHPIVLLSVVDHYNRIASNTKKRVLGTILGEKIDGVVHITNSYALPFDEDIKDINIF 80 FIDDNYNENLFNMIRKINTREKIVGWYTTGSNIKPNDIFINEIFYKYHHAPIFLLVNVHTNQSIFPVNAYVAIEKAISNN 160 KFRKTFIHIPVRIGAFEAEDVGVEFLLKELKSVSTSTLATKVGDKLSSLKTLISKLHEISEYLNDILQGNIEMNIKILYN 240 LQNVFSLLPDTENPELVEAFMVKNNDIMLNIFIGSITRSVIALHNLINNKIENKINTEKKQLLEDQSIKEKEKAKEK 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............................................................................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_0814200 8 ENDIFEK|NI 0.067 . PCHAS_0814200 15 NINVLER|IY 0.092 . PCHAS_0814200 20 ERIYLSK|HV 0.079 . PCHAS_0814200 38 VVDHYNR|IA 0.081 . PCHAS_0814200 44 RIASNTK|KR 0.055 . PCHAS_0814200 45 IASNTKK|RV 0.151 . PCHAS_0814200 46 ASNTKKR|VL 0.429 . PCHAS_0814200 55 GTILGEK|ID 0.062 . PCHAS_0814200 75 PFDEDIK|DI 0.063 . PCHAS_0814200 95 NLFNMIR|KI 0.089 . PCHAS_0814200 96 LFNMIRK|IN 0.084 . PCHAS_0814200 100 IRKINTR|EK 0.105 . PCHAS_0814200 102 KINTREK|IV 0.114 . PCHAS_0814200 114 TTGSNIK|PN 0.068 . PCHAS_0814200 126 INEIFYK|YH 0.072 . PCHAS_0814200 155 AYVAIEK|AI 0.065 . PCHAS_0814200 161 KAISNNK|FR 0.061 . PCHAS_0814200 163 ISNNKFR|KT 0.144 . PCHAS_0814200 164 SNNKFRK|TF 0.123 . PCHAS_0814200 172 FIHIPVR|IG 0.072 . PCHAS_0814200 188 GVEFLLK|EL 0.058 . PCHAS_0814200 191 FLLKELK|SV 0.101 . PCHAS_0814200 201 TSTLATK|VG 0.057 . PCHAS_0814200 205 ATKVGDK|LS 0.056 . PCHAS_0814200 210 DKLSSLK|TL 0.064 . PCHAS_0814200 215 LKTLISK|LH 0.061 . PCHAS_0814200 236 NIEMNIK|IL 0.061 . PCHAS_0814200 263 VEAFMVK|NN 0.073 . PCHAS_0814200 278 FIGSITR|SV 0.151 . PCHAS_0814200 290 HNLINNK|IE 0.061 . PCHAS_0814200 294 NNKIENK|IN 0.060 . PCHAS_0814200 299 NKINTEK|KQ 0.057 . PCHAS_0814200 300 KINTEKK|QL 0.114 . PCHAS_0814200 309 LEDQSIK|EK 0.063 . PCHAS_0814200 311 DQSIKEK|EK 0.068 . PCHAS_0814200 313 SIKEKEK|AK 0.077 . PCHAS_0814200 315 KEKEKAK|EK 0.073 . PCHAS_0814200 317 KEKAKEK|-- 0.066 . ____________________________^_________________

  • Fasta :-

    >PCHAS_0814200 ATGGAAAATGACATATTTGAGAAAAATATAAATGTTCTTGAAAGAATATATTTAAGCAAA CATGTTGTAGTACATCCTATAGTATTACTATCAGTAGTAGACCATTATAATCGTATTGCA AGTAATACAAAAAAAAGAGTTTTAGGAACAATTTTAGGAGAAAAGATTGATGGTGTTGTG CATATAACAAATAGCTATGCATTACCATTTGATGAAGATATTAAAGATATAAATATATTT TTTATAGATGATAATTATAATGAAAATTTGTTTAATATGATAAGAAAAATTAATACACGT GAAAAAATTGTTGGATGGTATACTACTGGATCTAATATAAAACCCAACGATATATTTATT AATGAAATATTTTATAAATATCATCATGCCCCTATATTTTTACTTGTCAACGTACATACA AATCAAAGTATTTTCCCAGTAAATGCATATGTAGCTATAGAAAAGGCTATATCGAATAAT AAATTTAGAAAGACATTTATTCATATCCCAGTTAGAATAGGCGCATTTGAAGCAGAAGAT GTTGGTGTTGAATTTTTGCTAAAGGAGTTAAAAAGTGTATCAACTTCAACACTAGCAACA AAAGTTGGTGATAAATTATCGTCACTAAAAACATTAATATCTAAGTTACACGAAATTTCT GAATATTTAAATGATATATTACAAGGGAATATAGAAATGAATATAAAAATATTATACAAT TTACAAAATGTTTTTAGCTTGCTACCTGACACTGAAAACCCAGAACTCGTTGAAGCCTTT ATGGTTAAAAATAATGATATTATGTTAAACATATTTATAGGTAGTATCACAAGATCGGTT ATAGCTCTTCACAATCTTATTAATAATAAAATAGAAAATAAAATAAATACCGAAAAAAAA CAACTTCTAGAGGATCAAAGTATTAAAGAAAAAGAAAAAGCCAAGGAAAAATAA
  • Download Fasta

  • Fasta :-

    MENDIFEKNINVLERIYLSKHVVVHPIVLLSVVDHYNRIASNTKKRVLGTILGEKIDGVV HITNSYALPFDEDIKDINIFFIDDNYNENLFNMIRKINTREKIVGWYTTGSNIKPNDIFI NEIFYKYHHAPIFLLVNVHTNQSIFPVNAYVAIEKAISNNKFRKTFIHIPVRIGAFEAED VGVEFLLKELKSVSTSTLATKVGDKLSSLKTLISKLHEISEYLNDILQGNIEMNIKILYN LQNVFSLLPDTENPELVEAFMVKNNDIMLNIFIGSITRSVIALHNLINNKIENKINTEKK QLLEDQSIKEKEKAKEK

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PCHAS_081420      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India