PCHAS_0814800 | protease, putative

  • Computed_GO_Component_IDs:  GO:0016020      

  • Computed_GO_Components:  membrane      

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_IDPredictionOTHERSPmTPCS_Position
PCHAS_0814800SP0.3791660.6058110.015023CS pos: 21-22. IEG-FK. Pr: 0.9866
No Results

  • Fasta :-

    >PCHAS_0814800 MMFRVLTFLWFNIIWFMRIEGFKINKNNIIIHKYKKIGGYNKINSSALRKIKQTYTYKKF AVHLKSNDDSVNNIKHRNIIKEQLSNFYKKNIYFFSKILLYMKNGASFITEKLTTSLASQ ILISISFFFLHFYLLSKNFIILLPYQLIPNHSNILMGLDFNNAFLIVSSLFFLKSFISNF ESFKTRLAPNRFTIPLKENKRKNILTVAVLFLASYILSGYVSIYAEQILRYSKSFNLDIS DTTIKSLQILIGHFMWVGCSIKIFSKFLYPYFKNNVSSLNFRYKDSWCFKVIYGYVCSHY IFNIIDLLNNTIINYFHNDDDIYIENSIDNIVNEKEFLSTFLCVISPCFSAPFFEEFIYR FFVLKSLSLFMNIHYAVTFSSLLFAIHHLNIFNVIPLFFLSFFWSYIYIYTDNILVTMII HSFWNIHVFLSSIYN
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_0814800.fa Sequence name : PCHAS_0814800 Sequence length : 435 VALUES OF COMPUTED PARAMETERS Coef20 : 5.092 CoefTot : -2.914 ChDiff : 20 ZoneTo : 67 KR : 14 DE : 1 CleavSite : 20 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.018 2.000 0.423 0.803 MesoH : 1.090 1.268 -0.015 0.567 MuHd_075 : 35.352 24.574 10.950 8.365 MuHd_095 : 30.570 22.364 9.329 8.973 MuHd_100 : 30.094 21.111 8.521 8.065 MuHd_105 : 33.158 20.731 9.352 8.461 Hmax_075 : 11.100 12.833 2.094 5.063 Hmax_095 : 4.725 8.500 0.072 4.147 Hmax_100 : 6.600 9.800 0.723 4.250 Hmax_105 : 1.167 8.867 -1.335 3.453 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0038 0.9962 DFMC : 0.0084 0.9916 This protein is probably imported in mitochondria. f(Ser) = 0.0448 f(Arg) = 0.0448 CMi = 0.33746 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 435 PCHAS_0814800 MMFRVLTFLWFNIIWFMRIEGFKINKNNIIIHKYKKIGGYNKINSSALRKIKQTYTYKKFAVHLKSNDDSVNNIKHRNII 80 KEQLSNFYKKNIYFFSKILLYMKNGASFITEKLTTSLASQILISISFFFLHFYLLSKNFIILLPYQLIPNHSNILMGLDF 160 NNAFLIVSSLFFLKSFISNFESFKTRLAPNRFTIPLKENKRKNILTVAVLFLASYILSGYVSIYAEQILRYSKSFNLDIS 240 DTTIKSLQILIGHFMWVGCSIKIFSKFLYPYFKNNVSSLNFRYKDSWCFKVIYGYVCSHYIFNIIDLLNNTIINYFHNDD 320 DIYIENSIDNIVNEKEFLSTFLCVISPCFSAPFFEEFIYRFFVLKSLSLFMNIHYAVTFSSLLFAIHHLNIFNVIPLFFL 400 SFFWSYIYIYTDNILVTMIIHSFWNIHVFLSSIYN 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_0814800 4 ---MMFR|VL 0.075 . PCHAS_0814800 18 NIIWFMR|IE 0.094 . PCHAS_0814800 23 MRIEGFK|IN 0.063 . PCHAS_0814800 26 EGFKINK|NN 0.060 . PCHAS_0814800 33 NNIIIHK|YK 0.070 . PCHAS_0814800 35 IIIHKYK|KI 0.089 . PCHAS_0814800 36 IIHKYKK|IG 0.108 . PCHAS_0814800 42 KIGGYNK|IN 0.070 . PCHAS_0814800 49 INSSALR|KI 0.110 . PCHAS_0814800 50 NSSALRK|IK 0.089 . PCHAS_0814800 52 SALRKIK|QT 0.143 . PCHAS_0814800 58 KQTYTYK|KF 0.062 . PCHAS_0814800 59 QTYTYKK|FA 0.108 . PCHAS_0814800 65 KFAVHLK|SN 0.120 . PCHAS_0814800 75 DSVNNIK|HR 0.066 . PCHAS_0814800 77 VNNIKHR|NI 0.156 . PCHAS_0814800 81 KHRNIIK|EQ 0.057 . PCHAS_0814800 89 QLSNFYK|KN 0.069 . PCHAS_0814800 90 LSNFYKK|NI 0.116 . PCHAS_0814800 97 NIYFFSK|IL 0.063 . PCHAS_0814800 103 KILLYMK|NG 0.054 . PCHAS_0814800 112 ASFITEK|LT 0.061 . PCHAS_0814800 137 HFYLLSK|NF 0.060 . PCHAS_0814800 174 SSLFFLK|SF 0.081 . PCHAS_0814800 184 SNFESFK|TR 0.056 . PCHAS_0814800 186 FESFKTR|LA 0.116 . PCHAS_0814800 191 TRLAPNR|FT 0.124 . PCHAS_0814800 197 RFTIPLK|EN 0.058 . PCHAS_0814800 200 IPLKENK|RK 0.059 . PCHAS_0814800 201 PLKENKR|KN 0.105 . PCHAS_0814800 202 LKENKRK|NI 0.110 . PCHAS_0814800 230 YAEQILR|YS 0.069 . PCHAS_0814800 233 QILRYSK|SF 0.116 . PCHAS_0814800 245 ISDTTIK|SL 0.082 . PCHAS_0814800 262 WVGCSIK|IF 0.063 . PCHAS_0814800 266 SIKIFSK|FL 0.074 . PCHAS_0814800 273 FLYPYFK|NN 0.060 . PCHAS_0814800 282 VSSLNFR|YK 0.108 . PCHAS_0814800 284 SLNFRYK|DS 0.080 . PCHAS_0814800 290 KDSWCFK|VI 0.081 . PCHAS_0814800 335 DNIVNEK|EF 0.055 . PCHAS_0814800 360 FEEFIYR|FF 0.078 . PCHAS_0814800 365 YRFFVLK|SL 0.091 . ____________________________^_________________

  • Fasta :-

    >PCHAS_0814800 ATGATGTTTCGGGTTTTGACTTTTCTGTGGTTTAACATAATTTGGTTTATGAGGATTGAA GGGTTTAAAATAAACAAGAATAATATAATTATACATAAATATAAAAAGATTGGAGGATAT AACAAAATAAACTCGTCTGCATTAAGAAAGATAAAACAAACATACACATACAAAAAGTTT GCAGTTCATTTAAAATCAAATGATGATTCAGTAAATAATATAAAACACAGAAATATAATA AAAGAGCAGTTATCTAATTTTTATAAAAAAAATATATATTTCTTTTCAAAAATATTATTA TATATGAAAAATGGAGCATCTTTTATAACGGAAAAGCTTACAACTTCATTAGCTTCACAG ATTTTAATTTCGATATCATTTTTTTTTTTACATTTTTATTTACTATCTAAGAATTTTATT ATTTTATTGCCTTATCAGCTAATACCTAATCATTCGAATATTCTTATGGGCCTAGATTTT AATAATGCATTTCTTATAGTTTCCTCTTTATTTTTTTTAAAAAGTTTTATATCAAATTTT GAAAGTTTTAAAACCAGATTAGCACCAAACAGATTTACAATACCTCTGAAAGAAAACAAA AGAAAAAATATATTGACAGTAGCCGTTCTATTTCTTGCCTCATATATATTATCAGGGTAC GTTTCGATATACGCGGAGCAAATATTGAGATATTCCAAGTCCTTTAATTTGGATATCTCA GACACGACCATAAAATCGTTGCAGATACTAATAGGGCATTTCATGTGGGTAGGATGCAGT ATTAAAATATTCAGTAAATTTTTATACCCTTATTTCAAAAACAATGTCAGTAGTTTAAAT TTCCGATACAAAGATAGTTGGTGTTTTAAAGTTATATATGGATATGTGTGTTCTCATTAT ATTTTCAATATTATAGACTTATTAAATAATACAATAATAAATTATTTTCATAACGATGAT GATATATATATAGAAAACAGTATAGACAATATAGTTAATGAAAAAGAATTTCTATCGACA TTTTTATGTGTAATTAGTCCATGTTTTAGTGCCCCATTCTTTGAAGAATTTATTTATAGA TTTTTTGTTCTTAAAAGTTTAAGTTTATTTATGAATATACATTATGCTGTTACATTTTCA TCATTACTTTTTGCTATTCATCATTTGAATATTTTTAATGTAATACCTTTATTTTTTTTA TCGTTTTTTTGGTCTTATATTTATATTTACACAGACAATATACTTGTCACTATGATTATT CATTCCTTTTGGAACATTCACGTTTTTTTATCTTCGATTTATAACTAG
  • Download Fasta

  • Fasta :-

    MMFRVLTFLWFNIIWFMRIEGFKINKNNIIIHKYKKIGGYNKINSSALRKIKQTYTYKKF AVHLKSNDDSVNNIKHRNIIKEQLSNFYKKNIYFFSKILLYMKNGASFITEKLTTSLASQ ILISISFFFLHFYLLSKNFIILLPYQLIPNHSNILMGLDFNNAFLIVSSLFFLKSFISNF ESFKTRLAPNRFTIPLKENKRKNILTVAVLFLASYILSGYVSIYAEQILRYSKSFNLDIS DTTIKSLQILIGHFMWVGCSIKIFSKFLYPYFKNNVSSLNFRYKDSWCFKVIYGYVCSHY IFNIIDLLNNTIINYFHNDDDIYIENSIDNIVNEKEFLSTFLCVISPCFSAPFFEEFIYR FFVLKSLSLFMNIHYAVTFSSLLFAIHHLNIFNVIPLFFLSFFWSYIYIYTDNILVTMII HSFWNIHVFLSSIYN

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PCHAS_081480      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India