PCHAS_0820400 | PPPDE peptidase, putative

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_IDPredictionOTHERSPmTPCS_Position
PCHAS_0820400OTHER0.9906620.0087040.000634
No Results

  • Fasta :-

    >PCHAS_0820400 MSIYLHTYILDVPFFLKNVRHTGIEVFGSEYTFSMDGIVTSKPKRSGIGRYSKSYELGFM KLTYYEFSEILNVLGKIYRPNTYNFIYKNCNHFCDDLFELLCGKRLLHSFMIYSRLGKFF GDFKNVAMCGSVNTMDITNDDKNMYVCALKLSKSILKKNKNINNKKTILYQNTINEDISH NFIQQPSYIIPYTPYSPTTISPSMYYNPSILTRSTQSSNYEKCFNDFNTNTYNTLYSLST TDGFSFP
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_0820400.fa Sequence name : PCHAS_0820400 Sequence length : 247 VALUES OF COMPUTED PARAMETERS Coef20 : 4.052 CoefTot : -1.167 ChDiff : 7 ZoneTo : 24 KR : 2 DE : 1 CleavSite : 22 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.894 0.935 -0.031 0.462 MesoH : -0.572 0.129 -0.451 0.138 MuHd_075 : 22.203 20.265 7.769 5.947 MuHd_095 : 13.341 14.163 6.732 3.311 MuHd_100 : 20.544 21.176 8.668 5.520 MuHd_105 : 27.144 24.574 9.181 6.940 Hmax_075 : 21.817 22.200 4.424 7.880 Hmax_095 : 3.500 14.700 0.061 3.754 Hmax_100 : 16.900 22.000 3.700 7.260 Hmax_105 : 10.700 27.183 4.767 5.520 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8924 0.1076 DFMC : 0.8958 0.1042
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 247 PCHAS_0820400 MSIYLHTYILDVPFFLKNVRHTGIEVFGSEYTFSMDGIVTSKPKRSGIGRYSKSYELGFMKLTYYEFSEILNVLGKIYRP 80 NTYNFIYKNCNHFCDDLFELLCGKRLLHSFMIYSRLGKFFGDFKNVAMCGSVNTMDITNDDKNMYVCALKLSKSILKKNK 160 NINNKKTILYQNTINEDISHNFIQQPSYIIPYTPYSPTTISPSMYYNPSILTRSTQSSNYEKCFNDFNTNTYNTLYSLST 240 TDGFSFP 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ....... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_0820400 17 DVPFFLK|NV 0.069 . PCHAS_0820400 20 FFLKNVR|HT 0.101 . PCHAS_0820400 42 DGIVTSK|PK 0.062 . PCHAS_0820400 44 IVTSKPK|RS 0.073 . PCHAS_0820400 45 VTSKPKR|SG 0.274 . PCHAS_0820400 50 KRSGIGR|YS 0.184 . PCHAS_0820400 53 GIGRYSK|SY 0.263 . PCHAS_0820400 61 YELGFMK|LT 0.061 . PCHAS_0820400 76 ILNVLGK|IY 0.069 . PCHAS_0820400 79 VLGKIYR|PN 0.083 . PCHAS_0820400 88 TYNFIYK|NC 0.070 . PCHAS_0820400 104 FELLCGK|RL 0.055 . PCHAS_0820400 105 ELLCGKR|LL 0.100 . PCHAS_0820400 115 SFMIYSR|LG 0.069 . PCHAS_0820400 118 IYSRLGK|FF 0.210 . PCHAS_0820400 124 KFFGDFK|NV 0.066 . PCHAS_0820400 142 DITNDDK|NM 0.054 . PCHAS_0820400 150 MYVCALK|LS 0.058 . PCHAS_0820400 153 CALKLSK|SI 0.074 . PCHAS_0820400 157 LSKSILK|KN 0.058 . PCHAS_0820400 158 SKSILKK|NK 0.111 . PCHAS_0820400 160 SILKKNK|NI 0.072 . PCHAS_0820400 165 NKNINNK|KT 0.074 . PCHAS_0820400 166 KNINNKK|TI 0.094 . PCHAS_0820400 213 NPSILTR|ST 0.168 . PCHAS_0820400 222 QSSNYEK|CF 0.073 . ____________________________^_________________

  • Fasta :-

    >PCHAS_0820400 ATGAGTATCTATTTGCATACATATATTTTGGACGTCCCTTTTTTCTTGAAAAATGTTCGT CATACAGGCATTGAAGTGTTTGGTAGCGAGTACACATTTTCAATGGATGGGATAGTAACA AGCAAACCAAAAAGGTCAGGAATAGGACGCTATAGTAAAAGTTATGAATTAGGATTTATG AAGCTAACATATTATGAATTTTCTGAAATTTTAAATGTACTTGGAAAAATATATAGACCT AATACATATAATTTTATATACAAAAATTGTAACCATTTCTGTGATGATTTATTTGAATTA TTATGCGGAAAAAGGTTATTACATAGTTTTATGATTTATTCAAGGTTAGGTAAATTTTTT GGTGACTTTAAAAATGTAGCTATGTGTGGGTCTGTTAATACTATGGATATAACAAATGAT GATAAGAATATGTATGTATGTGCTTTAAAATTATCAAAATCAATACTTAAAAAAAATAAA AATATAAATAATAAAAAAACAATATTATATCAAAATACCATTAATGAAGATATAAGTCAC AATTTTATTCAACAACCTTCCTATATTATTCCCTACACACCCTATAGTCCTACTACTATA TCACCAAGCATGTATTATAACCCAAGCATATTAACTAGATCAACACAAAGTTCAAATTAT GAAAAATGTTTCAACGATTTTAACACAAACACATATAATACATTATATTCATTAAGTACA ACTGATGGATTCTCTTTTCCATGA
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  • Fasta :-

    MSIYLHTYILDVPFFLKNVRHTGIEVFGSEYTFSMDGIVTSKPKRSGIGRYSKSYELGFM KLTYYEFSEILNVLGKIYRPNTYNFIYKNCNHFCDDLFELLCGKRLLHSFMIYSRLGKFF GDFKNVAMCGSVNTMDITNDDKNMYVCALKLSKSILKKNKNINNKKTILYQNTINEDISH NFIQQPSYIIPYTPYSPTTISPSMYYNPSILTRSTQSSNYEKCFNDFNTNTYNTLYSLST TDGFSFP

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PCHAS_082040      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India