PCHAS_0900061 | lysophospholipase, putative

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_IDPredictionOTHERSPmTPCS_Position
PCHAS_0900061OTHER0.9957580.0038910.000351
No Results

  • Fasta :-

    >PCHAS_0900061 MLYSIILMMEEIELNNDELRSTTLRKLDGDPKVGWLCNKNGLLLKTYRWLANNAAGIILL IHGYRVHTRLTFMRTNLKMPDNNEDLAIDSNNCYIYKDSWIEKFNQNGYSVYAVDLQGHG ESQGWKNVRGDFSSFDDLVDDVIQYMNHIQDEISNENQTDDESHDIVTTKKKKLPVYIIG YSMGGNIALRMLQILRKEKEDRIKAWNSNNYKNDNTMLNNSTNINENENDMNNANDYDSD NSCASTSTTKNVIASDKDEGFYNCLDKFNIKGCVSLSGMIRIKLKFDPGNKSFKYFYLPL AKFLSFVLPHIVISSEPRYKKSGYFSNICKRYIFRNINGKRYKNISEFIKTTVALDCNIN YMPKDIPLLFVHSKDDNICSYEWTVSFYNKVEVNKKDLHPVDGMNHDTTTNPGNEEILKA IIDWISDVRSNCEDEIEDE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_0900061.fa Sequence name : PCHAS_0900061 Sequence length : 439 VALUES OF COMPUTED PARAMETERS Coef20 : 3.748 CoefTot : 0.199 ChDiff : -10 ZoneTo : 9 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.212 1.653 0.040 0.638 MesoH : -0.886 0.149 -0.463 0.142 MuHd_075 : 4.833 4.368 0.707 1.190 MuHd_095 : 19.587 9.451 3.737 2.210 MuHd_100 : 24.201 12.289 4.958 3.046 MuHd_105 : 23.123 13.282 5.072 3.507 Hmax_075 : -0.350 8.983 -2.017 3.523 Hmax_095 : 12.200 10.400 0.243 3.760 Hmax_100 : 14.400 15.000 0.985 5.040 Hmax_105 : 14.400 18.317 1.965 6.020 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9910 0.0090 DFMC : 0.9853 0.0147
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 439 PCHAS_0900061 MLYSIILMMEEIELNNDELRSTTLRKLDGDPKVGWLCNKNGLLLKTYRWLANNAAGIILLIHGYRVHTRLTFMRTNLKMP 80 DNNEDLAIDSNNCYIYKDSWIEKFNQNGYSVYAVDLQGHGESQGWKNVRGDFSSFDDLVDDVIQYMNHIQDEISNENQTD 160 DESHDIVTTKKKKLPVYIIGYSMGGNIALRMLQILRKEKEDRIKAWNSNNYKNDNTMLNNSTNINENENDMNNANDYDSD 240 NSCASTSTTKNVIASDKDEGFYNCLDKFNIKGCVSLSGMIRIKLKFDPGNKSFKYFYLPLAKFLSFVLPHIVISSEPRYK 320 KSGYFSNICKRYIFRNINGKRYKNISEFIKTTVALDCNINYMPKDIPLLFVHSKDDNICSYEWTVSFYNKVEVNKKDLHP 400 VDGMNHDTTTNPGNEEILKAIIDWISDVRSNCEDEIEDE 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ....................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_0900061 20 LNNDELR|ST 0.108 . PCHAS_0900061 25 LRSTTLR|KL 0.118 . PCHAS_0900061 26 RSTTLRK|LD 0.084 . PCHAS_0900061 32 KLDGDPK|VG 0.055 . PCHAS_0900061 39 VGWLCNK|NG 0.052 . PCHAS_0900061 45 KNGLLLK|TY 0.058 . PCHAS_0900061 48 LLLKTYR|WL 0.084 . PCHAS_0900061 65 LLIHGYR|VH 0.075 . PCHAS_0900061 69 GYRVHTR|LT 0.101 . PCHAS_0900061 74 TRLTFMR|TN 0.104 . PCHAS_0900061 78 FMRTNLK|MP 0.061 . PCHAS_0900061 97 NNCYIYK|DS 0.074 . PCHAS_0900061 103 KDSWIEK|FN 0.080 . PCHAS_0900061 126 GESQGWK|NV 0.089 . PCHAS_0900061 129 QGWKNVR|GD 0.107 . PCHAS_0900061 170 HDIVTTK|KK 0.059 . PCHAS_0900061 171 DIVTTKK|KK 0.079 . PCHAS_0900061 172 IVTTKKK|KL 0.096 . PCHAS_0900061 173 VTTKKKK|LP 0.080 . PCHAS_0900061 190 GGNIALR|ML 0.092 . PCHAS_0900061 196 RMLQILR|KE 0.061 . PCHAS_0900061 197 MLQILRK|EK 0.091 . PCHAS_0900061 199 QILRKEK|ED 0.100 . PCHAS_0900061 202 RKEKEDR|IK 0.086 . PCHAS_0900061 204 EKEDRIK|AW 0.062 . PCHAS_0900061 212 WNSNNYK|ND 0.073 . PCHAS_0900061 250 ASTSTTK|NV 0.073 . PCHAS_0900061 257 NVIASDK|DE 0.069 . PCHAS_0900061 267 FYNCLDK|FN 0.076 . PCHAS_0900061 271 LDKFNIK|GC 0.060 . PCHAS_0900061 281 SLSGMIR|IK 0.091 . PCHAS_0900061 283 SGMIRIK|LK 0.065 . PCHAS_0900061 285 MIRIKLK|FD 0.067 . PCHAS_0900061 291 KFDPGNK|SF 0.056 . PCHAS_0900061 294 PGNKSFK|YF 0.069 . PCHAS_0900061 302 FYLPLAK|FL 0.076 . PCHAS_0900061 318 VISSEPR|YK 0.117 . PCHAS_0900061 320 SSEPRYK|KS 0.065 . PCHAS_0900061 321 SEPRYKK|SG 0.339 . PCHAS_0900061 330 YFSNICK|RY 0.058 . PCHAS_0900061 331 FSNICKR|YI 0.277 . PCHAS_0900061 335 CKRYIFR|NI 0.099 . PCHAS_0900061 340 FRNINGK|RY 0.063 . PCHAS_0900061 341 RNINGKR|YK 0.263 . PCHAS_0900061 343 INGKRYK|NI 0.091 . PCHAS_0900061 350 NISEFIK|TT 0.069 . PCHAS_0900061 364 NINYMPK|DI 0.072 . PCHAS_0900061 374 LLFVHSK|DD 0.070 . PCHAS_0900061 390 TVSFYNK|VE 0.064 . PCHAS_0900061 395 NKVEVNK|KD 0.060 . PCHAS_0900061 396 KVEVNKK|DL 0.152 . PCHAS_0900061 419 GNEEILK|AI 0.073 . PCHAS_0900061 429 DWISDVR|SN 0.099 . ____________________________^_________________

  • Fasta :-

    >PCHAS_0900061 ATGTTATATTCCATAATATTGATGATGGAAGAAATTGAATTGAATAATGATGAGTTAAGA AGTACTACACTAAGGAAATTAGATGGTGATCCTAAGGTAGGTTGGTTATGTAATAAAAAT GGTTTACTTTTAAAAACGTATAGATGGCTAGCTAATAATGCTGCAGGAATTATATTGTTA ATACATGGATACAGAGTTCATACACGATTAACTTTTATGAGAACAAATTTAAAAATGCCA GATAACAATGAAGACTTAGCAATAGACAGTAATAATTGCTATATTTATAAAGATAGTTGG ATTGAAAAATTTAATCAAAATGGTTATTCAGTATATGCAGTAGATTTGCAAGGACATGGA GAATCACAAGGATGGAAAAATGTAAGAGGTGATTTTAGTTCTTTTGATGATCTAGTTGAT GATGTAATACAATATATGAATCATATTCAAGATGAAATCTCGAATGAAAATCAAACGGAT GACGAATCTCATGATATAGTAACAACTAAAAAAAAAAAGCTTCCTGTATATATTATTGGG TATTCGATGGGAGGAAATATTGCTTTAAGAATGTTACAAATATTAAGGAAAGAAAAAGAA GATAGAATTAAGGCGTGGAATTCAAATAACTATAAAAATGATAACACCATGCTAAACAAT TCTACTAATATTAATGAAAATGAAAATGATATGAATAATGCTAATGATTATGATTCCGAT AATTCCTGTGCTAGTACCTCTACTACGAAAAATGTTATTGCTAGTGATAAAGATGAAGGC TTCTATAATTGTCTAGATAAATTCAATATTAAAGGTTGCGTATCTTTATCTGGCATGATA AGAATAAAATTAAAATTTGATCCTGGAAACAAATCATTTAAGTATTTTTATTTACCTCTA GCAAAATTCCTGTCTTTTGTCTTACCTCATATAGTTATTTCATCAGAACCACGTTATAAA AAGTCCGGATATTTTTCTAATATATGTAAACGTTATATATTTCGAAATATTAATGGAAAA AGATATAAAAATATATCAGAATTTATAAAAACAACGGTTGCATTGGATTGTAATATCAAT TATATGCCAAAAGACATTCCTTTATTATTTGTGCATTCAAAAGATGATAATATTTGTTCT TATGAGTGGACAGTTTCGTTTTATAATAAAGTGGAAGTTAATAAAAAAGATTTGCATCCT GTTGATGGTATGAATCATGATACAACGACAAACCCAGGAAATGAAGAAATTTTAAAAGCA ATTATTGATTGGATTTCGGATGTAAGAAGCAATTGTGAAGATGAAATAGAAGATGAATGA
  • Download Fasta

  • Fasta :-

    MLYSIILMMEEIELNNDELRSTTLRKLDGDPKVGWLCNKNGLLLKTYRWLANNAAGIILL IHGYRVHTRLTFMRTNLKMPDNNEDLAIDSNNCYIYKDSWIEKFNQNGYSVYAVDLQGHG ESQGWKNVRGDFSSFDDLVDDVIQYMNHIQDEISNENQTDDESHDIVTTKKKKLPVYIIG YSMGGNIALRMLQILRKEKEDRIKAWNSNNYKNDNTMLNNSTNINENENDMNNANDYDSD NSCASTSTTKNVIASDKDEGFYNCLDKFNIKGCVSLSGMIRIKLKFDPGNKSFKYFYLPL AKFLSFVLPHIVISSEPRYKKSGYFSNICKRYIFRNINGKRYKNISEFIKTTVALDCNIN YMPKDIPLLFVHSKDDNICSYEWTVSFYNKVEVNKKDLHPVDGMNHDTTTNPGNEEILKA IIDWISDVRSNCEDEIEDE

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
PCHAS_0900061255 SNVIASDKDE0.997unspPCHAS_0900061430 SSDVRSNCED0.992unsp

PCHAS_000540      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India