PCHAS_0910800 | rhomboid protease ROM1, putative

_IDPredictionOTHERSPmTPCS_Position
PCHAS_0910800OTHER0.9999500.0000020.000048
No Results

  • Fasta :-

    >PCHAS_0910800 MSNIHTLADYRDGYGENLPFNRTPGYYASQSSFIQRSKPIDVVNLIFPHFTWKSFVMVIS IIQIIVFIVSLSIRPGEFLTPSGSILVTLGANVGSKIKSGEIHRLILPIFLHANIFHAFF NVFFQLRMGFTLEKNYGILKVAILYFLTGIYGNILSSSVTYCTTKVGASTSGMGLLGIVT SELILLWHIIRHRERVVFNILFFTSISILYYFTFNGSNIDHVGHLGGLLSGISIGMLYNE KMENKPTWYNNARIASYVCLALLAIIPTVVLFAVPRVC
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_0910800.fa Sequence name : PCHAS_0910800 Sequence length : 278 VALUES OF COMPUTED PARAMETERS Coef20 : 3.060 CoefTot : 0.002 ChDiff : 8 ZoneTo : 8 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.335 2.941 0.578 0.925 MesoH : 0.657 1.167 -0.048 0.469 MuHd_075 : 16.353 10.275 4.589 4.707 MuHd_095 : 12.960 12.153 4.966 1.624 MuHd_100 : 16.202 17.759 5.918 3.371 MuHd_105 : 18.907 18.355 5.732 3.852 Hmax_075 : 1.400 5.717 -0.779 3.453 Hmax_095 : -3.150 5.500 -2.093 1.420 Hmax_100 : 2.400 10.900 0.031 2.840 Hmax_105 : 1.487 10.000 -0.311 2.712 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9952 0.0048 DFMC : 0.9953 0.0047
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 278 PCHAS_0910800 MSNIHTLADYRDGYGENLPFNRTPGYYASQSSFIQRSKPIDVVNLIFPHFTWKSFVMVISIIQIIVFIVSLSIRPGEFLT 80 PSGSILVTLGANVGSKIKSGEIHRLILPIFLHANIFHAFFNVFFQLRMGFTLEKNYGILKVAILYFLTGIYGNILSSSVT 160 YCTTKVGASTSGMGLLGIVTSELILLWHIIRHRERVVFNILFFTSISILYYFTFNGSNIDHVGHLGGLLSGISIGMLYNE 240 KMENKPTWYNNARIASYVCLALLAIIPTVVLFAVPRVC 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ...................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_0910800 11 HTLADYR|DG 0.079 . PCHAS_0910800 22 ENLPFNR|TP 0.086 . PCHAS_0910800 36 QSSFIQR|SK 0.146 . PCHAS_0910800 38 SFIQRSK|PI 0.072 . PCHAS_0910800 53 FPHFTWK|SF 0.095 . PCHAS_0910800 74 IVSLSIR|PG 0.098 . PCHAS_0910800 96 GANVGSK|IK 0.078 . PCHAS_0910800 98 NVGSKIK|SG 0.077 . PCHAS_0910800 104 KSGEIHR|LI 0.089 . PCHAS_0910800 127 NVFFQLR|MG 0.088 . PCHAS_0910800 134 MGFTLEK|NY 0.064 . PCHAS_0910800 140 KNYGILK|VA 0.060 . PCHAS_0910800 165 VTYCTTK|VG 0.055 . PCHAS_0910800 191 LLWHIIR|HR 0.092 . PCHAS_0910800 193 WHIIRHR|ER 0.068 . PCHAS_0910800 195 IIRHRER|VV 0.152 . PCHAS_0910800 241 GMLYNEK|ME 0.052 . PCHAS_0910800 245 NEKMENK|PT 0.063 . PCHAS_0910800 253 TWYNNAR|IA 0.141 . PCHAS_0910800 276 VLFAVPR|VC 0.083 . ____________________________^_________________

  • Fasta :-

    >PCHAS_0910800 ATGAGTAACATCCATACATTAGCAGATTATAGGGATGGATATGGCGAGAATCTTCCATTC AATAGAACACCAGGATATTATGCGTCACAGAGTAGTTTTATTCAAAGGTCAAAACCTATT GATGTAGTTAACTTAATTTTCCCCCATTTCACATGGAAAAGTTTTGTTATGGTTATTTCC ATAATACAGATTATCGTTTTTATAGTGTCTCTTAGTATAAGGCCTGGCGAATTTCTAACT CCTTCTGGCAGCATATTAGTAACACTAGGAGCAAATGTTGGATCAAAAATAAAAAGCGGA GAAATACACAGATTAATATTGCCTATATTTTTGCATGCAAATATATTTCACGCATTTTTT AATGTGTTTTTTCAATTAAGAATGGGATTTACTCTTGAAAAAAATTATGGAATATTAAAA GTTGCGATTTTATATTTTTTAACGGGGATATATGGAAATATATTATCATCATCGGTTACA TATTGTACAACAAAAGTGGGCGCAAGTACATCAGGCATGGGGTTATTAGGAATCGTAACA TCCGAATTAATTTTATTATGGCATATTATTAGACATAGAGAAAGAGTAGTATTTAATATT TTATTTTTTACGTCAATTTCCATTTTATATTATTTTACATTTAATGGATCAAATATAGAT CATGTTGGTCATTTAGGAGGTCTTTTATCTGGTATATCTATTGGAATGCTTTATAATGAG AAGATGGAAAACAAGCCAACATGGTATAATAATGCAAGAATTGCCTCTTATGTATGTTTA GCACTGCTAGCTATAATTCCAACTGTTGTTTTGTTTGCTGTTCCTCGTGTATGCTAG
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  • Fasta :-

    MSNIHTLADYRDGYGENLPFNRTPGYYASQSSFIQRSKPIDVVNLIFPHFTWKSFVMVIS IIQIIVFIVSLSIRPGEFLTPSGSILVTLGANVGSKIKSGEIHRLILPIFLHANIFHAFF NVFFQLRMGFTLEKNYGILKVAILYFLTGIYGNILSSSVTYCTTKVGASTSGMGLLGIVT SELILLWHIIRHRERVVFNILFFTSISILYYFTFNGSNIDHVGHLGGLLSGISIGMLYNE KMENKPTWYNNARIASYVCLALLAIIPTVVLFAVPRVC

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PCHAS_091080      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India