PCHAS_0912500 | pyridoxine biosynthesis protein PDX2, putative

_IDPredictionOTHERSPmTPCS_Position
PCHAS_0912500OTHER0.9634040.0312830.005313
No Results

  • Fasta :-

    >PCHAS_0912500 MENITIGVLALQGNFQSHINHFLQLQNPSLKVIEVRNKTDLRECDGIVIPGGESTTSRKC MSYDNDSLYNALKNYIHVKKKPVWGTCAGCILLSEKVEKIKDDDVEDEYGNDFSLGGLDI EITRNYYGSQNDSFICSLNIKSQNPIFKKNIRAPCIRAPFIKNILSDKVVTIATFSHESY GKSIIGAVEQDNCMGTVFHPELMPYTSFHEYFLEKVKKHIKDSGEA
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_0912500.fa Sequence name : PCHAS_0912500 Sequence length : 226 VALUES OF COMPUTED PARAMETERS Coef20 : 3.543 CoefTot : -1.758 ChDiff : -3 ZoneTo : 33 KR : 1 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.606 0.900 -0.091 0.376 MesoH : -0.779 0.103 -0.448 0.151 MuHd_075 : 20.452 18.239 7.482 4.987 MuHd_095 : 24.528 19.951 6.927 5.768 MuHd_100 : 28.760 23.517 8.853 7.075 MuHd_105 : 29.713 23.804 10.078 7.067 Hmax_075 : 18.083 19.483 0.211 3.940 Hmax_095 : 8.400 16.012 -0.388 6.282 Hmax_100 : 12.600 15.100 1.682 5.170 Hmax_105 : 12.717 15.500 0.601 3.920 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9349 0.0651 DFMC : 0.9326 0.0674
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 226 PCHAS_0912500 MENITIGVLALQGNFQSHINHFLQLQNPSLKVIEVRNKTDLRECDGIVIPGGESTTSRKCMSYDNDSLYNALKNYIHVKK 80 KPVWGTCAGCILLSEKVEKIKDDDVEDEYGNDFSLGGLDIEITRNYYGSQNDSFICSLNIKSQNPIFKKNIRAPCIRAPF 160 IKNILSDKVVTIATFSHESYGKSIIGAVEQDNCMGTVFHPELMPYTSFHEYFLEKVKKHIKDSGEA 240 ................................................................................ 80 ................................................................................ 160 .................................................................. 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_0912500 31 LQNPSLK|VI 0.070 . PCHAS_0912500 36 LKVIEVR|NK 0.099 . PCHAS_0912500 38 VIEVRNK|TD 0.058 . PCHAS_0912500 42 RNKTDLR|EC 0.088 . PCHAS_0912500 58 GESTTSR|KC 0.109 . PCHAS_0912500 59 ESTTSRK|CM 0.081 . PCHAS_0912500 73 SLYNALK|NY 0.064 . PCHAS_0912500 79 KNYIHVK|KK 0.068 . PCHAS_0912500 80 NYIHVKK|KP 0.092 . PCHAS_0912500 81 YIHVKKK|PV 0.186 . PCHAS_0912500 96 CILLSEK|VE 0.055 . PCHAS_0912500 99 LSEKVEK|IK 0.074 . PCHAS_0912500 101 EKVEKIK|DD 0.076 . PCHAS_0912500 124 LDIEITR|NY 0.085 . PCHAS_0912500 141 ICSLNIK|SQ 0.085 . PCHAS_0912500 148 SQNPIFK|KN 0.072 . PCHAS_0912500 149 QNPIFKK|NI 0.093 . PCHAS_0912500 152 IFKKNIR|AP 0.080 . PCHAS_0912500 157 IRAPCIR|AP 0.099 . PCHAS_0912500 162 IRAPFIK|NI 0.071 . PCHAS_0912500 168 KNILSDK|VV 0.079 . PCHAS_0912500 182 SHESYGK|SI 0.094 . PCHAS_0912500 215 HEYFLEK|VK 0.063 . PCHAS_0912500 217 YFLEKVK|KH 0.054 . PCHAS_0912500 218 FLEKVKK|HI 0.164 . PCHAS_0912500 221 KVKKHIK|DS 0.089 . ____________________________^_________________

  • Fasta :-

    >PCHAS_0912500 ATGGAAAATATAACTATAGGTGTTTTAGCTTTACAAGGAAATTTCCAATCACATATAAAT CATTTCCTTCAGTTGCAAAATCCATCCCTCAAAGTTATAGAGGTTAGGAATAAAACAGAT TTAAGGGAATGCGATGGAATTGTTATACCTGGAGGAGAATCAACAACATCGAGAAAATGC ATGTCATATGATAATGACTCCTTATATAACGCCTTGAAAAATTATATTCATGTTAAAAAA AAACCTGTGTGGGGTACTTGTGCTGGATGTATTTTACTATCAGAAAAAGTTGAAAAAATC AAGGATGATGATGTTGAAGATGAATATGGAAATGACTTTTCCTTGGGAGGGTTGGATATA GAAATTACACGAAATTATTATGGATCACAGAATGATAGCTTTATTTGCTCATTAAATATA AAATCTCAAAATCCGATTTTTAAAAAAAACATTAGAGCACCATGTATAAGAGCACCATTT ATAAAAAATATATTATCAGACAAGGTTGTAACAATTGCAACATTTTCGCATGAATCATAT GGAAAGAGTATTATAGGAGCGGTTGAACAAGACAATTGTATGGGAACCGTTTTTCACCCC GAATTAATGCCATATACAAGTTTTCATGAGTATTTTCTTGAAAAGGTTAAAAAACATATA AAGGATTCAGGGGAAGCATAA
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  • Fasta :-

    MENITIGVLALQGNFQSHINHFLQLQNPSLKVIEVRNKTDLRECDGIVIPGGESTTSRKC MSYDNDSLYNALKNYIHVKKKPVWGTCAGCILLSEKVEKIKDDDVEDEYGNDFSLGGLDI EITRNYYGSQNDSFICSLNIKSQNPIFKKNIRAPCIRAPFIKNILSDKVVTIATFSHESY GKSIIGAVEQDNCMGTVFHPELMPYTSFHEYFLEKVKKHIKDSGEA

  • title: conserved cys residue
  • coordinates: C87
No Results
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PCHAS_091250      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India