PCHAS_0935300 | rhomboid protease ROM3, putative

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PCHAS_0935300OTHER0.9999950.0000000.000004
No Results

  • Fasta :-

    >PCHAS_0935300 MLNEYAENNENSNLLPGTAGLIEKNAQNKFYDALFPHISLNRIIVWISFFQILIYILSCL LSENLTVPNVDVLMFLGATYGPSIKQGELWRLVFPIFLHANWWHLIINIICILNLGLVIE TKYKKKRFLLIYFLSGFIGNTLTTICNPCQLAVGASTSGFGLIGCSIMEIFLAWKNLSKK AKNYYIFNISIFLVFFLFVSFSPTVDFFGHIGGFVCGAFLACHYNKFLGYDIFQECLHYG FASICALIIFYLPLRLFVLNMPCEFV
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_0935300.fa Sequence name : PCHAS_0935300 Sequence length : 266 VALUES OF COMPUTED PARAMETERS Coef20 : 2.948 CoefTot : -0.012 ChDiff : 2 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.406 2.376 0.420 0.878 MesoH : 0.987 1.308 0.072 0.573 MuHd_075 : 17.034 15.039 5.355 4.194 MuHd_095 : 13.048 7.526 3.316 2.476 MuHd_100 : 15.448 3.954 3.767 1.700 MuHd_105 : 21.030 9.394 5.334 2.409 Hmax_075 : 1.983 7.583 -1.376 3.477 Hmax_095 : -1.488 -1.925 -3.174 1.452 Hmax_100 : -3.700 -1.500 -3.763 1.020 Hmax_105 : 0.583 0.467 -1.981 1.890 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9507 0.0493 DFMC : 0.9304 0.0696
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 266 PCHAS_0935300 MLNEYAENNENSNLLPGTAGLIEKNAQNKFYDALFPHISLNRIIVWISFFQILIYILSCLLSENLTVPNVDVLMFLGATY 80 GPSIKQGELWRLVFPIFLHANWWHLIINIICILNLGLVIETKYKKKRFLLIYFLSGFIGNTLTTICNPCQLAVGASTSGF 160 GLIGCSIMEIFLAWKNLSKKAKNYYIFNISIFLVFFLFVSFSPTVDFFGHIGGFVCGAFLACHYNKFLGYDIFQECLHYG 240 FASICALIIFYLPLRLFVLNMPCEFV 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .......................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_0935300 24 TAGLIEK|NA 0.070 . PCHAS_0935300 29 EKNAQNK|FY 0.097 . PCHAS_0935300 42 PHISLNR|II 0.074 . PCHAS_0935300 85 TYGPSIK|QG 0.061 . PCHAS_0935300 91 KQGELWR|LV 0.130 . PCHAS_0935300 122 GLVIETK|YK 0.062 . PCHAS_0935300 124 VIETKYK|KK 0.059 . PCHAS_0935300 125 IETKYKK|KR 0.068 . PCHAS_0935300 126 ETKYKKK|RF 0.081 . PCHAS_0935300 127 TKYKKKR|FL 0.341 . PCHAS_0935300 175 EIFLAWK|NL 0.063 . PCHAS_0935300 179 AWKNLSK|KA 0.058 . PCHAS_0935300 180 WKNLSKK|AK 0.118 . PCHAS_0935300 182 NLSKKAK|NY 0.090 . PCHAS_0935300 226 LACHYNK|FL 0.096 . PCHAS_0935300 255 IFYLPLR|LF 0.066 . ____________________________^_________________

  • Fasta :-

    >PCHAS_0935300 ATGTTAAACGAATATGCGGAAAATAATGAAAATTCAAATTTGTTACCTGGGACTGCTGGA CTGATTGAGAAAAATGCACAAAATAAATTTTACGATGCTTTATTTCCTCATATATCACTA AATAGAATTATTGTATGGATTAGTTTTTTTCAAATATTAATTTATATATTGAGTTGCTTA TTAAGTGAAAACTTAACAGTTCCTAATGTAGACGTCTTGATGTTCCTTGGAGCTACATAT GGGCCATCCATCAAGCAAGGAGAATTATGGAGACTAGTATTTCCTATATTTTTGCACGCC AATTGGTGGCATTTAATTATAAATATAATATGTATTTTAAATTTAGGGTTAGTAATTGAG ACTAAGTATAAAAAAAAGCGGTTTTTATTAATATATTTTTTATCGGGATTTATTGGAAAT ACATTAACAACAATTTGTAATCCTTGCCAATTGGCAGTTGGAGCATCAACTAGTGGATTT GGATTAATTGGATGCTCTATTATGGAAATATTTTTAGCTTGGAAAAATTTATCGAAGAAA GCAAAAAATTATTATATATTTAATATATCTATTTTTTTAGTATTTTTTTTATTTGTAAGT TTTTCTCCAACTGTTGATTTTTTTGGTCATATAGGAGGATTTGTGTGCGGAGCTTTTTTG GCATGCCATTACAACAAGTTTTTGGGATATGACATTTTTCAGGAATGTCTACATTACGGA TTTGCCTCGATTTGTGCTTTAATTATTTTTTATTTACCACTTCGCCTATTCGTTTTGAAT ATGCCATGTGAATTTGTTTAG
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  • Fasta :-

    MLNEYAENNENSNLLPGTAGLIEKNAQNKFYDALFPHISLNRIIVWISFFQILIYILSCL LSENLTVPNVDVLMFLGATYGPSIKQGELWRLVFPIFLHANWWHLIINIICILNLGLVIE TKYKKKRFLLIYFLSGFIGNTLTTICNPCQLAVGASTSGFGLIGCSIMEIFLAWKNLSKK AKNYYIFNISIFLVFFLFVSFSPTVDFFGHIGGFVCGAFLACHYNKFLGYDIFQECLHYG FASICALIIFYLPLRLFVLNMPCEFV

    No Results
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PCHAS_093530      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India