PCHAS_1002000 | ubiquitin specific protease, putative

_IDPredictionOTHERSPmTPCS_Position
PCHAS_1002000OTHER0.9999660.0000220.000012
No Results

  • Fasta :-

    >PCHAS_1002000 MNISYHNIIDLFNIKNYEYYEKYYNYEEAKRNHTAFVNNGNICYCNASLQLILSIKPLCI YIIKNFDKFYLKTQSKYKGDIIKTVYELIHETYNIGETKHNNILCTNKHINLLKKINKYN LHLDIFSQNDAHEFMLLLLNYINIECNRYTDNEKNVEIILDENDGKELAGDKYWVKYLYK ENSIITDLLGFQNISTITCFNCDHTRYSFEFCLDLGLEFPDENIKSTTLIELLKNNINKS DDICSLDCNNCKLKKTSRIKKGIYRMPNLYMIIYIKRFKWVYYQSNNGYNNKVKKIDTIV LLPQDGIVDFTNFIQLSNHNSLYNAKYIIESIICHSGNSYNGHYTSIVKHYDGFYKCNDD KIYKLDTPYDHNNISDIYLLLLRRLS
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_1002000.fa Sequence name : PCHAS_1002000 Sequence length : 386 VALUES OF COMPUTED PARAMETERS Coef20 : 3.240 CoefTot : -0.552 ChDiff : 2 ZoneTo : 9 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.041 1.771 0.208 0.587 MesoH : -1.005 0.007 -0.505 0.135 MuHd_075 : 12.545 12.886 6.239 3.808 MuHd_095 : 22.575 11.891 5.894 2.490 MuHd_100 : 15.386 11.167 3.974 1.862 MuHd_105 : 10.108 10.578 3.508 2.140 Hmax_075 : -0.000 10.200 -0.665 3.900 Hmax_095 : 8.400 8.100 0.012 3.940 Hmax_100 : 4.100 7.000 -1.344 3.340 Hmax_105 : 0.000 6.900 -1.848 2.840 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9926 0.0074 DFMC : 0.9951 0.0049
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 386 PCHAS_1002000 MNISYHNIIDLFNIKNYEYYEKYYNYEEAKRNHTAFVNNGNICYCNASLQLILSIKPLCIYIIKNFDKFYLKTQSKYKGD 80 IIKTVYELIHETYNIGETKHNNILCTNKHINLLKKINKYNLHLDIFSQNDAHEFMLLLLNYINIECNRYTDNEKNVEIIL 160 DENDGKELAGDKYWVKYLYKENSIITDLLGFQNISTITCFNCDHTRYSFEFCLDLGLEFPDENIKSTTLIELLKNNINKS 240 DDICSLDCNNCKLKKTSRIKKGIYRMPNLYMIIYIKRFKWVYYQSNNGYNNKVKKIDTIVLLPQDGIVDFTNFIQLSNHN 320 SLYNAKYIIESIICHSGNSYNGHYTSIVKHYDGFYKCNDDKIYKLDTPYDHNNISDIYLLLLRRLS 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .................................................................. 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_1002000 15 IDLFNIK|NY 0.062 . PCHAS_1002000 22 NYEYYEK|YY 0.064 . PCHAS_1002000 30 YNYEEAK|RN 0.070 . PCHAS_1002000 31 NYEEAKR|NH 0.115 . PCHAS_1002000 56 QLILSIK|PL 0.063 . PCHAS_1002000 64 LCIYIIK|NF 0.058 . PCHAS_1002000 68 IIKNFDK|FY 0.069 . PCHAS_1002000 72 FDKFYLK|TQ 0.061 . PCHAS_1002000 76 YLKTQSK|YK 0.100 . PCHAS_1002000 78 KTQSKYK|GD 0.071 . PCHAS_1002000 83 YKGDIIK|TV 0.082 . PCHAS_1002000 99 YNIGETK|HN 0.065 . PCHAS_1002000 108 NILCTNK|HI 0.059 . PCHAS_1002000 114 KHINLLK|KI 0.070 . PCHAS_1002000 115 HINLLKK|IN 0.107 . PCHAS_1002000 118 LLKKINK|YN 0.061 . PCHAS_1002000 148 INIECNR|YT 0.103 . PCHAS_1002000 154 RYTDNEK|NV 0.077 . PCHAS_1002000 166 LDENDGK|EL 0.062 . PCHAS_1002000 172 KELAGDK|YW 0.059 . PCHAS_1002000 176 GDKYWVK|YL 0.073 . PCHAS_1002000 180 WVKYLYK|EN 0.067 . PCHAS_1002000 206 FNCDHTR|YS 0.090 . PCHAS_1002000 225 FPDENIK|ST 0.071 . PCHAS_1002000 234 TLIELLK|NN 0.060 . PCHAS_1002000 239 LKNNINK|SD 0.090 . PCHAS_1002000 252 LDCNNCK|LK 0.060 . PCHAS_1002000 254 CNNCKLK|KT 0.084 . PCHAS_1002000 255 NNCKLKK|TS 0.093 . PCHAS_1002000 258 KLKKTSR|IK 0.099 . PCHAS_1002000 260 KKTSRIK|KG 0.058 . PCHAS_1002000 261 KTSRIKK|GI 0.456 . PCHAS_1002000 265 IKKGIYR|MP 0.080 . PCHAS_1002000 276 YMIIYIK|RF 0.058 . PCHAS_1002000 277 MIIYIKR|FK 0.179 . PCHAS_1002000 279 IYIKRFK|WV 0.076 . PCHAS_1002000 292 NNGYNNK|VK 0.057 . PCHAS_1002000 294 GYNNKVK|KI 0.086 . PCHAS_1002000 295 YNNKVKK|ID 0.142 . PCHAS_1002000 326 NSLYNAK|YI 0.076 . PCHAS_1002000 349 HYTSIVK|HY 0.058 . PCHAS_1002000 356 HYDGFYK|CN 0.068 . PCHAS_1002000 361 YKCNDDK|IY 0.057 . PCHAS_1002000 364 NDDKIYK|LD 0.057 . PCHAS_1002000 383 IYLLLLR|RL 0.071 . PCHAS_1002000 384 YLLLLRR|LS 0.087 . ____________________________^_________________

  • Fasta :-

    >PCHAS_1002000 ATGAATATATCATATCACAACATTATTGATCTATTTAACATAAAAAACTACGAGTATTAT GAAAAGTACTACAACTATGAAGAGGCCAAAAGAAACCACACAGCATTTGTCAATAATGGA AATATATGTTATTGCAATGCTTCGCTACAACTAATTTTGTCAATTAAACCTCTTTGCATA TATATAATAAAAAATTTCGACAAATTTTACCTAAAGACTCAATCTAAATATAAAGGAGAT ATAATTAAAACAGTGTATGAACTGATTCACGAGACTTATAATATTGGAGAAACAAAGCAT AATAATATATTATGTACAAATAAGCATATAAATTTACTTAAAAAAATTAACAAATATAAT TTACACTTGGATATTTTTTCACAAAATGATGCCCATGAATTTATGCTACTATTACTAAAT TATATTAACATAGAATGTAATAGATATACAGATAATGAAAAAAATGTGGAAATAATATTG GACGAAAACGATGGCAAAGAACTGGCAGGTGATAAATACTGGGTAAAATATCTATATAAA GAAAATAGTATAATAACGGATTTGCTAGGATTTCAAAATATTTCTACTATTACATGTTTT AATTGTGATCATACACGATATAGTTTTGAATTTTGCTTGGATTTGGGATTAGAATTTCCT GATGAAAATATAAAAAGTACTACACTTATAGAATTGCTTAAAAATAACATAAATAAAAGT GATGATATTTGCTCCTTAGATTGTAATAATTGTAAACTAAAAAAAACTAGCCGAATCAAA AAAGGGATATATAGAATGCCTAATTTATATATGATAATATATATAAAAAGATTTAAATGG GTATATTACCAAAGTAATAACGGTTATAATAATAAAGTTAAAAAAATAGATACAATTGTA TTACTACCACAAGATGGTATCGTCGATTTTACAAATTTTATACAACTTTCTAACCATAAC TCTTTATATAATGCTAAATATATTATTGAAAGTATTATATGTCATAGTGGAAATAGTTAT AATGGCCATTACACATCTATAGTTAAGCATTACGATGGATTTTACAAATGCAACGACGAT AAAATATATAAGTTAGATACACCATACGATCATAACAATATCAGTGATATATATTTGCTT TTGCTAAGGAGATTATCCTAG
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  • Fasta :-

    MNISYHNIIDLFNIKNYEYYEKYYNYEEAKRNHTAFVNNGNICYCNASLQLILSIKPLCI YIIKNFDKFYLKTQSKYKGDIIKTVYELIHETYNIGETKHNNILCTNKHINLLKKINKYN LHLDIFSQNDAHEFMLLLLNYINIECNRYTDNEKNVEIILDENDGKELAGDKYWVKYLYK ENSIITDLLGFQNISTITCFNCDHTRYSFEFCLDLGLEFPDENIKSTTLIELLKNNINKS DDICSLDCNNCKLKKTSRIKKGIYRMPNLYMIIYIKRFKWVYYQSNNGYNNKVKKIDTIV LLPQDGIVDFTNFIQLSNHNSLYNAKYIIESIICHSGNSYNGHYTSIVKHYDGFYKCNDD KIYKLDTPYDHNNISDIYLLLLRRLS

    No Results
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PCHAS_100200      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India