PCHAS_1041600 | lysophospholipase, putative

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_IDPredictionOTHERSPmTPCS_Position
PCHAS_1041600OTHER0.9761690.0004140.023417
No Results

  • Fasta :-

    >PCHAS_1041600 MDNFRFKNLFRNAKYKLAGKPKEGWLFNKNGLLLKTYRWLVNNPIGIVLLIHGFQGNTQL TFMKEAVQTVYSNKGMKFYDKGFTYKGSWIEKFNQNNYSVYGIDLQGHGGSQSPGKIRGS VNCFNDLVDDVIQYMNEIQDDISNENQTDDESHDIVPTKKKRLPMYVIGHSMGGNIALRI LQLLGKEKEDRIKAKDSKTMLCNFNDINETDNDADDMNNANDYDSDNSGASASTMANGSS CANNKDERCYNCLDNLNIKGCVSLAGMIRINIPFDSGNKSFNDFYLPIINYASQIAPDAR LLVNFRRHNPPTYSVNIHNNNNGLELKCVYELIKATVTLDSDINYMPKDIPFLIVHSKDD SMCSYEWAASFCNKAKTDKKELYSLDDMDHVITTNPGYEDVLKKVADWISDVRMNDNDEI KHDIKHDIKPKIKHDIKPKIKHKIKQKIRHEIEEKKENEIYNAV
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_1041600.fa Sequence name : PCHAS_1041600 Sequence length : 464 VALUES OF COMPUTED PARAMETERS Coef20 : 3.960 CoefTot : -4.468 ChDiff : -2 ZoneTo : 79 KR : 13 DE : 3 CleavSite : 48 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.965 1.171 -0.007 0.587 MesoH : -0.802 -0.025 -0.445 0.144 MuHd_075 : 35.300 24.420 10.820 7.439 MuHd_095 : 39.922 26.056 10.428 8.199 MuHd_100 : 29.978 21.455 8.243 6.965 MuHd_105 : 26.592 21.061 9.373 6.211 Hmax_075 : 15.167 26.717 1.242 4.270 Hmax_095 : 6.300 9.887 -0.711 3.902 Hmax_100 : 5.600 9.500 2.822 3.840 Hmax_105 : -3.000 18.083 0.643 2.220 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.4770 0.5230 DFMC : 0.5356 0.4644
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 464 PCHAS_1041600 MDNFRFKNLFRNAKYKLAGKPKEGWLFNKNGLLLKTYRWLVNNPIGIVLLIHGFQGNTQLTFMKEAVQTVYSNKGMKFYD 80 KGFTYKGSWIEKFNQNNYSVYGIDLQGHGGSQSPGKIRGSVNCFNDLVDDVIQYMNEIQDDISNENQTDDESHDIVPTKK 160 KRLPMYVIGHSMGGNIALRILQLLGKEKEDRIKAKDSKTMLCNFNDINETDNDADDMNNANDYDSDNSGASASTMANGSS 240 CANNKDERCYNCLDNLNIKGCVSLAGMIRINIPFDSGNKSFNDFYLPIINYASQIAPDARLLVNFRRHNPPTYSVNIHNN 320 NNGLELKCVYELIKATVTLDSDINYMPKDIPFLIVHSKDDSMCSYEWAASFCNKAKTDKKELYSLDDMDHVITTNPGYED 400 VLKKVADWISDVRMNDNDEIKHDIKHDIKPKIKHDIKPKIKHKIKQKIRHEIEEKKENEIYNAV 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................ 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_1041600 5 --MDNFR|FK 0.082 . PCHAS_1041600 7 MDNFRFK|NL 0.072 . PCHAS_1041600 11 RFKNLFR|NA 0.107 . PCHAS_1041600 14 NLFRNAK|YK 0.145 . PCHAS_1041600 16 FRNAKYK|LA 0.108 . PCHAS_1041600 20 KYKLAGK|PK 0.063 . PCHAS_1041600 22 KLAGKPK|EG 0.065 . PCHAS_1041600 29 EGWLFNK|NG 0.054 . PCHAS_1041600 35 KNGLLLK|TY 0.059 . PCHAS_1041600 38 LLLKTYR|WL 0.082 . PCHAS_1041600 64 TQLTFMK|EA 0.069 . PCHAS_1041600 74 QTVYSNK|GM 0.066 . PCHAS_1041600 77 YSNKGMK|FY 0.104 . PCHAS_1041600 81 GMKFYDK|GF 0.073 . PCHAS_1041600 86 DKGFTYK|GS 0.074 . PCHAS_1041600 92 KGSWIEK|FN 0.071 . PCHAS_1041600 116 GSQSPGK|IR 0.075 . PCHAS_1041600 118 QSPGKIR|GS 0.104 . PCHAS_1041600 159 HDIVPTK|KK 0.062 . PCHAS_1041600 160 DIVPTKK|KR 0.074 . PCHAS_1041600 161 IVPTKKK|RL 0.092 . PCHAS_1041600 162 VPTKKKR|LP 0.186 . PCHAS_1041600 179 GGNIALR|IL 0.081 . PCHAS_1041600 186 ILQLLGK|EK 0.065 . PCHAS_1041600 188 QLLGKEK|ED 0.061 . PCHAS_1041600 191 GKEKEDR|IK 0.088 . PCHAS_1041600 193 EKEDRIK|AK 0.066 . PCHAS_1041600 195 EDRIKAK|DS 0.134 . PCHAS_1041600 198 IKAKDSK|TM 0.061 . PCHAS_1041600 245 SSCANNK|DE 0.066 . PCHAS_1041600 248 ANNKDER|CY 0.082 . PCHAS_1041600 259 LDNLNIK|GC 0.062 . PCHAS_1041600 269 SLAGMIR|IN 0.087 . PCHAS_1041600 279 PFDSGNK|SF 0.058 . PCHAS_1041600 300 QIAPDAR|LL 0.090 . PCHAS_1041600 306 RLLVNFR|RH 0.069 . PCHAS_1041600 307 LLVNFRR|HN 0.124 . PCHAS_1041600 327 NNGLELK|CV 0.074 . PCHAS_1041600 334 CVYELIK|AT 0.060 . PCHAS_1041600 348 DINYMPK|DI 0.075 . PCHAS_1041600 358 FLIVHSK|DD 0.073 . PCHAS_1041600 374 AASFCNK|AK 0.078 . PCHAS_1041600 376 SFCNKAK|TD 0.078 . PCHAS_1041600 379 NKAKTDK|KE 0.064 . PCHAS_1041600 380 KAKTDKK|EL 0.093 . PCHAS_1041600 403 GYEDVLK|KV 0.077 . PCHAS_1041600 404 YEDVLKK|VA 0.109 . PCHAS_1041600 413 DWISDVR|MN 0.077 . PCHAS_1041600 421 NDNDEIK|HD 0.065 . PCHAS_1041600 425 EIKHDIK|HD 0.057 . PCHAS_1041600 429 DIKHDIK|PK 0.059 . PCHAS_1041600 431 KHDIKPK|IK 0.072 . PCHAS_1041600 433 DIKPKIK|HD 0.060 . PCHAS_1041600 437 KIKHDIK|PK 0.061 . PCHAS_1041600 439 KHDIKPK|IK 0.070 . PCHAS_1041600 441 DIKPKIK|HK 0.067 . PCHAS_1041600 443 KPKIKHK|IK 0.081 . PCHAS_1041600 445 KIKHKIK|QK 0.077 . PCHAS_1041600 447 KHKIKQK|IR 0.072 . PCHAS_1041600 449 KIKQKIR|HE 0.089 . PCHAS_1041600 455 RHEIEEK|KE 0.061 . PCHAS_1041600 456 HEIEEKK|EN 0.098 . ____________________________^_________________

  • Fasta :-

    >PCHAS_1041600 ATGGATAATTTTAGATTTAAAAATTTATTCAGAAATGCAAAATACAAACTAGCTGGTAAA CCTAAGGAAGGTTGGTTATTTAATAAAAATGGTTTACTTTTAAAAACATATAGATGGCTA GTTAATAATCCTATAGGAATTGTACTGTTAATACATGGATTCCAAGGTAATACTCAATTA ACTTTTATGAAAGAAGCAGTACAAACTGTATATTCCAATAAAGGAATGAAATTTTATGAT AAAGGCTTTACGTATAAAGGTAGTTGGATTGAAAAATTTAATCAAAATAATTATTCAGTA TATGGAATAGATTTGCAAGGACATGGTGGATCACAATCACCGGGAAAAATAAGAGGCAGT GTTAATTGCTTTAATGATCTAGTTGATGATGTAATACAATATATGAATGAGATTCAAGAT GATATCTCGAATGAAAATCAAACGGATGACGAATCTCATGATATAGTACCAACTAAAAAA AAAAGACTTCCTATGTATGTTATTGGACATTCGATGGGTGGAAATATTGCTTTAAGAATC TTACAATTACTAGGGAAAGAAAAAGAAGATAGAATTAAGGCTAAAGATTCAAAAACCATG TTATGCAACTTTAATGATATTAATGAAACTGATAATGATGCGGATGATATGAATAATGCT AATGATTATGATTCCGATAATTCCGGTGCTAGTGCTTCTACTATGGCAAATGGTAGTTCT TGTGCTAATAATAAAGATGAAAGATGTTATAATTGTTTAGATAATTTAAATATTAAAGGT TGCGTGTCTTTAGCTGGTATGATAAGAATAAACATACCATTCGATTCTGGAAACAAATCA TTTAATGATTTTTATTTACCTATAATAAACTACGCGTCTCAGATCGCACCAGATGCACGA CTTTTGGTAAATTTCCGCCGTCATAACCCCCCCACATATTCTGTTAATATACATAATAAT AATAATGGACTAGAATTAAAATGTGTATATGAACTTATAAAAGCAACAGTCACATTGGAT TCTGATATTAATTATATGCCAAAAGATATTCCTTTCTTAATTGTGCATTCAAAAGATGAC AGTATGTGTTCTTATGAATGGGCAGCTTCATTTTGTAATAAAGCAAAGACTGATAAAAAA GAATTATATTCTCTTGATGACATGGATCATGTTATAACGACAAACCCAGGATATGAGGAT GTTTTGAAAAAAGTTGCTGATTGGATTTCTGATGTAAGAATGAATGATAATGATGAAATA AAACATGATATAAAACATGATATAAAACCTAAAATAAAACATGATATAAAACCTAAAATA AAACATAAAATAAAACAAAAAATAAGACATGAAATAGAAGAAAAGAAAGAAAATGAAATA TATAATGCAGTTTAA
  • Download Fasta

  • Fasta :-

    MDNFRFKNLFRNAKYKLAGKPKEGWLFNKNGLLLKTYRWLVNNPIGIVLLIHGFQGNTQL TFMKEAVQTVYSNKGMKFYDKGFTYKGSWIEKFNQNNYSVYGIDLQGHGGSQSPGKIRGS VNCFNDLVDDVIQYMNEIQDDISNENQTDDESHDIVPTKKKRLPMYVIGHSMGGNIALRI LQLLGKEKEDRIKAKDSKTMLCNFNDINETDNDADDMNNANDYDSDNSGASASTMANGSS CANNKDERCYNCLDNLNIKGCVSLAGMIRINIPFDSGNKSFNDFYLPIINYASQIAPDAR LLVNFRRHNPPTYSVNIHNNNNGLELKCVYELIKATVTLDSDINYMPKDIPFLIVHSKDD SMCSYEWAASFCNKAKTDKKELYSLDDMDHVITTNPGYEDVLKKVADWISDVRMNDNDEI KHDIKHDIKPKIKHDIKPKIKHKIKQKIRHEIEEKKENEIYNAV

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
PCHAS_1041600143 SQDDISNENQ0.991unspPCHAS_1041600384 SKELYSLDDM0.992unsp

PCHAS_104160      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India