PCHAS_1117300 | rhomboid protease ROM10, putative

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PCHAS_1117300OTHER0.9999770.0000080.000015
No Results

  • Fasta :-

    >PCHAS_1117300 MRFLMNYQNLPNDESFDDSDLLLLKYATLFYKTFKKKIQFIQILFPSYKHHYVTIILSVF LYIFFFGYDIYFFNKYNPLFIRDDVITRIGINRDIITTEYHFHKLITATLIHPNIWSLII NTYYLINLGIVVEKNYGRVHTIAIMLFSSICGNLLMCATANCNESQLGTSTILSGMMGLF LQEVTSNFRRISGKIEIIGTYLFTIISMYLTISMFPHNGNIMGNLGGLFGGYCYPYIFNV ARLDNGPGNTERLVHTALMGLYWILLILNLLFVKC
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_1117300.fa Sequence name : PCHAS_1117300 Sequence length : 275 VALUES OF COMPUTED PARAMETERS Coef20 : 3.191 CoefTot : -0.588 ChDiff : 4 ZoneTo : 12 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.094 2.365 0.445 0.872 MesoH : 0.525 0.836 -0.062 0.413 MuHd_075 : 33.453 15.528 7.658 4.342 MuHd_095 : 37.283 12.566 8.350 5.256 MuHd_100 : 26.113 7.590 5.518 3.766 MuHd_105 : 8.376 6.734 2.649 3.702 Hmax_075 : 6.067 1.983 -1.940 1.797 Hmax_095 : 5.000 2.600 -2.599 1.770 Hmax_100 : 5.000 2.600 -2.599 2.140 Hmax_105 : -9.000 2.450 -3.909 2.357 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9610 0.0390 DFMC : 0.9516 0.0484
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 275 PCHAS_1117300 MRFLMNYQNLPNDESFDDSDLLLLKYATLFYKTFKKKIQFIQILFPSYKHHYVTIILSVFLYIFFFGYDIYFFNKYNPLF 80 IRDDVITRIGINRDIITTEYHFHKLITATLIHPNIWSLIINTYYLINLGIVVEKNYGRVHTIAIMLFSSICGNLLMCATA 160 NCNESQLGTSTILSGMMGLFLQEVTSNFRRISGKIEIIGTYLFTIISMYLTISMFPHNGNIMGNLGGLFGGYCYPYIFNV 240 ARLDNGPGNTERLVHTALMGLYWILLILNLLFVKC 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_1117300 2 -----MR|FL 0.120 . PCHAS_1117300 25 SDLLLLK|YA 0.062 . PCHAS_1117300 32 YATLFYK|TF 0.061 . PCHAS_1117300 35 LFYKTFK|KK 0.065 . PCHAS_1117300 36 FYKTFKK|KI 0.096 . PCHAS_1117300 37 YKTFKKK|IQ 0.107 . PCHAS_1117300 49 ILFPSYK|HH 0.063 . PCHAS_1117300 75 DIYFFNK|YN 0.060 . PCHAS_1117300 82 YNPLFIR|DD 0.092 . PCHAS_1117300 88 RDDVITR|IG 0.067 . PCHAS_1117300 93 TRIGINR|DI 0.184 . PCHAS_1117300 104 TEYHFHK|LI 0.082 . PCHAS_1117300 134 LGIVVEK|NY 0.074 . PCHAS_1117300 138 VEKNYGR|VH 0.083 . PCHAS_1117300 189 EVTSNFR|RI 0.077 . PCHAS_1117300 190 VTSNFRR|IS 0.313 . PCHAS_1117300 194 FRRISGK|IE 0.078 . PCHAS_1117300 242 YIFNVAR|LD 0.096 . PCHAS_1117300 252 GPGNTER|LV 0.188 . PCHAS_1117300 274 LNLLFVK|C- 0.060 . ____________________________^_________________

  • Fasta :-

    >PCHAS_1117300 ATGAGATTTCTTATGAATTATCAAAATTTACCAAATGATGAGTCATTTGATGACTCGGAC TTGTTACTTTTAAAATATGCAACATTATTTTATAAAACCTTTAAGAAGAAGATTCAATTT ATTCAAATCTTATTCCCTTCCTATAAACACCATTATGTTACCATAATCCTCTCCGTATTC TTATATATTTTTTTCTTTGGATATGACATATATTTCTTTAACAAATACAACCCTTTATTT ATTAGAGACGATGTAATAACACGTATAGGAATAAACAGAGACATTATTACAACTGAATAC CATTTCCACAAATTAATAACAGCCACATTAATTCATCCTAATATATGGAGTTTGATAATT AACACATATTACTTAATTAACCTTGGAATAGTTGTCGAGAAGAATTATGGGCGAGTTCAT ACTATAGCAATCATGTTATTTAGTTCGATCTGTGGGAACTTATTAATGTGTGCAACCGCA AACTGCAATGAATCCCAATTAGGAACAAGTACTATACTATCGGGAATGATGGGACTCTTT TTACAAGAAGTGACATCCAACTTTCGAAGAATTAGCGGAAAAATTGAAATCATAGGGACT TACTTGTTTACCATCATATCAATGTATTTGACAATATCCATGTTCCCACACAATGGAAAC ATTATGGGGAACCTTGGAGGATTGTTCGGAGGTTATTGCTACCCTTATATTTTTAATGTA GCTAGATTGGACAACGGACCAGGAAATACCGAAAGATTAGTCCATACCGCATTAATGGGC TTATATTGGATTTTGTTAATACTTAACTTATTATTTGTTAAATGCTAA
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  • Fasta :-

    MRFLMNYQNLPNDESFDDSDLLLLKYATLFYKTFKKKIQFIQILFPSYKHHYVTIILSVF LYIFFFGYDIYFFNKYNPLFIRDDVITRIGINRDIITTEYHFHKLITATLIHPNIWSLII NTYYLINLGIVVEKNYGRVHTIAIMLFSSICGNLLMCATANCNESQLGTSTILSGMMGLF LQEVTSNFRRISGKIEIIGTYLFTIISMYLTISMFPHNGNIMGNLGGLFGGYCYPYIFNV ARLDNGPGNTERLVHTALMGLYWILLILNLLFVKC

    No Results
No Results
No Results
IDSitePeptideScoreMethod
PCHAS_1117300192 SFRRISGKIE0.991unsp

PCHAS_111730      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India