PCHAS_1129900 | proteasome subunit alpha type-4, putative

_IDPredictionOTHERSPmTPCS_Position
PCHAS_1129900OTHER0.9996810.0001040.000215
No Results

  • Fasta :-

    >PCHAS_1129900 MARRYDSRTTTFSPEGRLYQVEYALEAINNASITIGIITNDGVILGADKVFISKLINKAN NFEKIYKIDDHIFCGVAGLNADANILINQSRLYAQRYLYNYNDVEPVAQLVVQICDIKQS YTQYGGLRPYGVSFLIAGYDTKEGYQLYHTDPSGNYSGWFATAIGTNNLTASSILKQEWK KDMTLQEGLLLAIKTLAKSTDSEVPKCEKIELAYLSNQDGKVIQKYLTEKEIAELIKIYT QQNVKK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_1129900.fa Sequence name : PCHAS_1129900 Sequence length : 246 VALUES OF COMPUTED PARAMETERS Coef20 : 4.248 CoefTot : 0.254 ChDiff : 0 ZoneTo : 5 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.082 1.394 0.155 0.584 MesoH : -0.553 0.404 -0.390 0.251 MuHd_075 : 23.056 5.387 3.615 6.134 MuHd_095 : 14.841 4.720 3.134 2.857 MuHd_100 : 18.488 8.050 3.829 4.676 MuHd_105 : 19.679 11.334 4.048 6.197 Hmax_075 : -3.850 -2.975 -3.651 0.210 Hmax_095 : -1.312 -1.050 -2.054 0.411 Hmax_100 : 10.800 3.300 0.402 2.970 Hmax_105 : -1.283 -0.933 -1.926 2.065 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6807 0.3193 DFMC : 0.6428 0.3572
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 246 PCHAS_1129900 MARRYDSRTTTFSPEGRLYQVEYALEAINNASITIGIITNDGVILGADKVFISKLINKANNFEKIYKIDDHIFCGVAGLN 80 ADANILINQSRLYAQRYLYNYNDVEPVAQLVVQICDIKQSYTQYGGLRPYGVSFLIAGYDTKEGYQLYHTDPSGNYSGWF 160 ATAIGTNNLTASSILKQEWKKDMTLQEGLLLAIKTLAKSTDSEVPKCEKIELAYLSNQDGKVIQKYLTEKEIAELIKIYT 240 QQNVKK 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ...... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_1129900 3 ----MAR|RY 0.096 . PCHAS_1129900 4 ---MARR|YD 0.146 . PCHAS_1129900 8 ARRYDSR|TT 0.106 . PCHAS_1129900 17 TFSPEGR|LY 0.096 . PCHAS_1129900 49 VILGADK|VF 0.054 . PCHAS_1129900 54 DKVFISK|LI 0.064 . PCHAS_1129900 58 ISKLINK|AN 0.060 . PCHAS_1129900 64 KANNFEK|IY 0.072 . PCHAS_1129900 67 NFEKIYK|ID 0.072 . PCHAS_1129900 91 ILINQSR|LY 0.081 . PCHAS_1129900 96 SRLYAQR|YL 0.107 . PCHAS_1129900 118 VQICDIK|QS 0.063 . PCHAS_1129900 128 TQYGGLR|PY 0.103 . PCHAS_1129900 142 IAGYDTK|EG 0.064 . PCHAS_1129900 176 TASSILK|QE 0.076 . PCHAS_1129900 180 ILKQEWK|KD 0.065 . PCHAS_1129900 181 LKQEWKK|DM 0.141 . PCHAS_1129900 194 GLLLAIK|TL 0.060 . PCHAS_1129900 198 AIKTLAK|ST 0.085 . PCHAS_1129900 206 TDSEVPK|CE 0.082 . PCHAS_1129900 209 EVPKCEK|IE 0.055 . PCHAS_1129900 221 LSNQDGK|VI 0.079 . PCHAS_1129900 225 DGKVIQK|YL 0.074 . PCHAS_1129900 230 QKYLTEK|EI 0.065 . PCHAS_1129900 237 EIAELIK|IY 0.067 . PCHAS_1129900 245 YTQQNVK|K- 0.057 . PCHAS_1129900 246 TQQNVKK|-- 0.145 . ____________________________^_________________

  • Fasta :-

    >PCHAS_1129900 ATGGCTAGGCGATATGATAGTAGAACAACAACATTTTCTCCTGAAGGAAGATTATATCAA GTAGAATATGCACTTGAAGCTATAAACAATGCAAGTATAACTATAGGAATAATAACTAAT GATGGTGTAATATTAGGTGCTGATAAAGTCTTTATATCAAAGTTAATAAATAAAGCTAAT AATTTTGAAAAAATATACAAAATTGATGATCATATATTTTGTGGAGTAGCAGGATTAAAT GCTGATGCAAATATATTAATAAATCAATCACGATTATATGCACAAAGATATTTATATAAT TATAATGATGTTGAGCCAGTAGCACAATTAGTAGTTCAAATATGTGACATTAAACAAAGC TATACCCAATATGGTGGATTGAGACCATATGGAGTTAGCTTTTTAATTGCTGGATATGAT ACAAAAGAAGGTTATCAACTTTATCATACCGATCCTAGTGGAAATTATTCTGGATGGTTT GCTACCGCTATTGGTACAAATAATTTGACAGCTAGTTCTATTCTTAAGCAGGAATGGAAA AAAGATATGACCCTGCAAGAAGGTTTATTGCTAGCTATAAAAACGCTAGCTAAGAGCACA GATAGTGAAGTCCCAAAATGTGAAAAAATTGAATTAGCCTATTTGTCAAATCAAGACGGA AAGGTTATCCAAAAATATTTAACAGAGAAAGAAATAGCAGAATTAATTAAAATATATACA CAACAAAATGTTAAAAAATAA
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  • Fasta :-

    MARRYDSRTTTFSPEGRLYQVEYALEAINNASITIGIITNDGVILGADKVFISKLINKAN NFEKIYKIDDHIFCGVAGLNADANILINQSRLYAQRYLYNYNDVEPVAQLVVQICDIKQS YTQYGGLRPYGVSFLIAGYDTKEGYQLYHTDPSGNYSGWFATAIGTNNLTASSILKQEWK KDMTLQEGLLLAIKTLAKSTDSEVPKCEKIELAYLSNQDGKVIQKYLTEKEIAELIKIYT QQNVKK

  • title: active site
  • coordinates: S32,D48,V50,K64,T166
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
PCHAS_11299007 SRRYDSRTTT0.992unspPCHAS_112990013 STTTFSPEGR0.99unsp

PCHAS_112990      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India