PCHAS_1130000 | proteasome subunit alpha type-7, putative

_IDPredictionOTHERSPmTPCS_Position
PCHAS_1130000OTHER0.9999410.0000300.000030
No Results

  • Fasta :-

    >PCHAS_1130000 MSYDRAITVFSPDGHLLQVEHALEAVKKGGCAVAIKSSNFAVLVVEKKNIPKLQNPRTTE KLVKLDENTCLAFSGLNADARILVNKTRLECQRYYLNMDQPAPVDYIAKYVARIQQKFTH RGGVRPFGIATLITGFKNNKEICIYQTEPSGIYASWKAQAIGKNAKVVQEFLEKNYQENM EKNECLLLALKAIFEVVELSSKNVELALLTEGELKYIDEQEINSLVEIIDNERTQKNAQN D
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_1130000.fa Sequence name : PCHAS_1130000 Sequence length : 241 VALUES OF COMPUTED PARAMETERS Coef20 : 3.580 CoefTot : -0.045 ChDiff : 0 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.965 1.665 0.154 0.504 MesoH : -1.188 0.080 -0.544 0.106 MuHd_075 : 28.573 14.937 6.543 4.663 MuHd_095 : 12.129 9.750 3.119 2.812 MuHd_100 : 14.109 14.515 5.303 4.707 MuHd_105 : 15.524 17.553 6.307 6.098 Hmax_075 : 12.862 11.025 1.795 4.043 Hmax_095 : 7.000 6.037 0.113 3.526 Hmax_100 : 7.400 12.100 0.248 4.210 Hmax_105 : 3.600 11.600 -0.028 4.480 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9824 0.0176 DFMC : 0.9780 0.0220
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 241 PCHAS_1130000 MSYDRAITVFSPDGHLLQVEHALEAVKKGGCAVAIKSSNFAVLVVEKKNIPKLQNPRTTEKLVKLDENTCLAFSGLNADA 80 RILVNKTRLECQRYYLNMDQPAPVDYIAKYVARIQQKFTHRGGVRPFGIATLITGFKNNKEICIYQTEPSGIYASWKAQA 160 IGKNAKVVQEFLEKNYQENMEKNECLLLALKAIFEVVELSSKNVELALLTEGELKYIDEQEINSLVEIIDNERTQKNAQN 240 D 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 . 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_1130000 5 --MSYDR|AI 0.082 . PCHAS_1130000 27 HALEAVK|KG 0.060 . PCHAS_1130000 28 ALEAVKK|GG 0.115 . PCHAS_1130000 36 GCAVAIK|SS 0.079 . PCHAS_1130000 47 AVLVVEK|KN 0.063 . PCHAS_1130000 48 VLVVEKK|NI 0.090 . PCHAS_1130000 52 EKKNIPK|LQ 0.060 . PCHAS_1130000 57 PKLQNPR|TT 0.086 . PCHAS_1130000 61 NPRTTEK|LV 0.077 . PCHAS_1130000 64 TTEKLVK|LD 0.062 . PCHAS_1130000 81 GLNADAR|IL 0.104 . PCHAS_1130000 86 ARILVNK|TR 0.063 . PCHAS_1130000 88 ILVNKTR|LE 0.081 . PCHAS_1130000 93 TRLECQR|YY 0.089 . PCHAS_1130000 109 PVDYIAK|YV 0.083 . PCHAS_1130000 113 IAKYVAR|IQ 0.104 . PCHAS_1130000 117 VARIQQK|FT 0.088 . PCHAS_1130000 121 QQKFTHR|GG 0.079 . PCHAS_1130000 125 THRGGVR|PF 0.108 . PCHAS_1130000 137 TLITGFK|NN 0.058 . PCHAS_1130000 140 TGFKNNK|EI 0.070 . PCHAS_1130000 157 GIYASWK|AQ 0.074 . PCHAS_1130000 163 KAQAIGK|NA 0.074 . PCHAS_1130000 166 AIGKNAK|VV 0.077 . PCHAS_1130000 174 VQEFLEK|NY 0.056 . PCHAS_1130000 182 YQENMEK|NE 0.055 . PCHAS_1130000 191 CLLLALK|AI 0.060 . PCHAS_1130000 202 VVELSSK|NV 0.071 . PCHAS_1130000 215 LTEGELK|YI 0.076 . PCHAS_1130000 233 EIIDNER|TQ 0.068 . PCHAS_1130000 236 DNERTQK|NA 0.116 . ____________________________^_________________

  • Fasta :-

    >PCHAS_1130000 ATGAGTTATGATCGAGCTATAACCGTTTTCAGTCCAGATGGACATCTATTACAAGTAGAA CATGCCTTGGAGGCAGTAAAGAAAGGTGGTTGTGCAGTAGCTATAAAAAGTTCGAATTTC GCTGTTTTAGTTGTTGAAAAAAAAAATATTCCAAAACTTCAAAATCCAAGGACAACAGAA AAATTAGTTAAACTTGATGAAAACACATGCTTGGCTTTTTCAGGTTTAAATGCCGATGCA AGAATTTTAGTCAACAAGACTCGCTTGGAGTGTCAACGATACTATTTAAATATGGATCAA CCCGCCCCTGTTGACTATATAGCAAAATACGTTGCAAGAATACAACAAAAATTTACTCAT AGAGGAGGTGTTCGACCTTTTGGAATTGCAACATTAATAACAGGATTCAAAAATAATAAA GAAATCTGTATATATCAAACTGAACCCAGTGGAATTTATGCATCTTGGAAAGCCCAGGCA ATAGGAAAGAATGCCAAGGTCGTTCAGGAATTTTTAGAAAAAAATTATCAAGAAAATATG GAAAAAAACGAGTGCCTCCTCTTAGCTTTAAAAGCGATATTTGAGGTCGTTGAATTGAGC AGCAAAAATGTGGAGCTCGCTCTCCTTACCGAGGGAGAATTAAAATACATCGACGAGCAA GAAATTAATTCATTGGTCGAAATAATTGATAACGAGAGGACACAGAAGAATGCCCAGAAT GATTAA
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  • Fasta :-

    MSYDRAITVFSPDGHLLQVEHALEAVKKGGCAVAIKSSNFAVLVVEKKNIPKLQNPRTTE KLVKLDENTCLAFSGLNADARILVNKTRLECQRYYLNMDQPAPVDYIAKYVARIQQKFTH RGGVRPFGIATLITGFKNNKEICIYQTEPSGIYASWKAQAIGKNAKVVQEFLEKNYQENM EKNECLLLALKAIFEVVELSSKNVELALLTEGELKYIDEQEINSLVEIIDNERTQKNAQN D

  • title: active site
  • coordinates: G30,E46,K48,K61,K163
No Results
No Results
IDSitePeptideScoreMethod
PCHAS_113000059 TNPRTTEKLV0.992unsp

PCHAS_113000      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India