PCHAS_1134100 | rhomboid protease ROM7, putative

_IDPredictionOTHERSPmTPCS_Position
PCHAS_1134100SP0.1250840.8665230.008393CS pos: 18-19. GNS-LH. Pr: 0.6893
No Results

  • Fasta :-

    >PCHAS_1134100 MNLSILLIFIIYITRGNSLHYNKINSKGITAFINTKNPILKNEYKVYRFKKYNNVEKKIY SFKESALSLFNTVKDKEKIANLLENISNNVKIKFPNRFIYYNYLFNKCKLDRILIVINTL LYLYLNRVDKNEEKKIFFTKGNLVQIKDEQKAEKYQCNYYDIYKNKNYKTLFSSIFIHKN ILHLYFNMSSLMSIYRMISPIYSNSQILITYLLSGFLSNLISYIYYMKPLKKDIFLKDII DQNYYSRDIPLNKPNKIICGSSSAIYSLYGMYITHMIFFYFKNNYIMNTGFLYNIFYSFL SSLLLENVSHFNHILGFISGFFMSSTLILFDNN
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_1134100.fa Sequence name : PCHAS_1134100 Sequence length : 333 VALUES OF COMPUTED PARAMETERS Coef20 : 4.429 CoefTot : -1.474 ChDiff : 22 ZoneTo : 42 KR : 5 DE : 0 CleavSite : 17 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.406 2.006 0.383 0.783 MesoH : 0.846 0.800 -0.110 0.461 MuHd_075 : 25.953 20.076 8.890 6.880 MuHd_095 : 22.230 18.562 6.723 6.162 MuHd_100 : 21.271 19.588 6.967 5.908 MuHd_105 : 20.864 19.113 7.339 5.552 Hmax_075 : 6.883 15.983 0.740 4.690 Hmax_095 : 1.050 10.850 1.126 2.914 Hmax_100 : 13.500 12.700 2.262 4.220 Hmax_105 : 7.600 15.400 1.033 4.820 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.2275 0.7725 DFMC : 0.1673 0.8327 This protein is probably imported in mitochondria. f(Ser) = 0.0714 f(Arg) = 0.0238 CMi = 0.69124 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 333 PCHAS_1134100 MNLSILLIFIIYITRGNSLHYNKINSKGITAFINTKNPILKNEYKVYRFKKYNNVEKKIYSFKESALSLFNTVKDKEKIA 80 NLLENISNNVKIKFPNRFIYYNYLFNKCKLDRILIVINTLLYLYLNRVDKNEEKKIFFTKGNLVQIKDEQKAEKYQCNYY 160 DIYKNKNYKTLFSSIFIHKNILHLYFNMSSLMSIYRMISPIYSNSQILITYLLSGFLSNLISYIYYMKPLKKDIFLKDII 240 DQNYYSRDIPLNKPNKIICGSSSAIYSLYGMYITHMIFFYFKNNYIMNTGFLYNIFYSFLSSLLLENVSHFNHILGFISG 320 FFMSSTLILFDNN 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ............. 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_1134100 15 FIIYITR|GN 0.079 . PCHAS_1134100 23 NSLHYNK|IN 0.081 . PCHAS_1134100 27 YNKINSK|GI 0.075 . PCHAS_1134100 36 TAFINTK|NP 0.057 . PCHAS_1134100 41 TKNPILK|NE 0.070 . PCHAS_1134100 45 ILKNEYK|VY 0.060 . PCHAS_1134100 48 NEYKVYR|FK 0.099 . PCHAS_1134100 50 YKVYRFK|KY 0.069 . PCHAS_1134100 51 KVYRFKK|YN 0.348 . PCHAS_1134100 57 KYNNVEK|KI 0.071 . PCHAS_1134100 58 YNNVEKK|IY 0.172 . PCHAS_1134100 63 KKIYSFK|ES 0.069 . PCHAS_1134100 74 SLFNTVK|DK 0.083 . PCHAS_1134100 76 FNTVKDK|EK 0.066 . PCHAS_1134100 78 TVKDKEK|IA 0.074 . PCHAS_1134100 91 NISNNVK|IK 0.066 . PCHAS_1134100 93 SNNVKIK|FP 0.081 . PCHAS_1134100 97 KIKFPNR|FI 0.094 . PCHAS_1134100 107 YNYLFNK|CK 0.060 . PCHAS_1134100 109 YLFNKCK|LD 0.062 . PCHAS_1134100 112 NKCKLDR|IL 0.093 . PCHAS_1134100 127 LYLYLNR|VD 0.068 . PCHAS_1134100 130 YLNRVDK|NE 0.163 . PCHAS_1134100 134 VDKNEEK|KI 0.062 . PCHAS_1134100 135 DKNEEKK|IF 0.126 . PCHAS_1134100 140 KKIFFTK|GN 0.079 . PCHAS_1134100 147 GNLVQIK|DE 0.086 . PCHAS_1134100 151 QIKDEQK|AE 0.057 . PCHAS_1134100 154 DEQKAEK|YQ 0.068 . PCHAS_1134100 164 NYYDIYK|NK 0.055 . PCHAS_1134100 166 YDIYKNK|NY 0.071 . PCHAS_1134100 169 YKNKNYK|TL 0.075 . PCHAS_1134100 179 SSIFIHK|NI 0.064 . PCHAS_1134100 196 SLMSIYR|MI 0.132 . PCHAS_1134100 228 SYIYYMK|PL 0.060 . PCHAS_1134100 231 YYMKPLK|KD 0.054 . PCHAS_1134100 232 YMKPLKK|DI 0.107 . PCHAS_1134100 237 KKDIFLK|DI 0.089 . PCHAS_1134100 247 DQNYYSR|DI 0.095 . PCHAS_1134100 253 RDIPLNK|PN 0.064 . PCHAS_1134100 256 PLNKPNK|II 0.072 . PCHAS_1134100 282 MIFFYFK|NN 0.066 . ____________________________^_________________

  • Fasta :-

    >PCHAS_1134100 ATGAATCTTTCAATTTTGCTGATATTTATAATATATATTACAAGAGGGAATTCGTTGCAT TATAACAAAATAAATTCCAAAGGAATAACTGCATTTATAAATACTAAAAATCCTATTTTA AAAAATGAATACAAAGTATATCGATTCAAAAAATATAACAATGTAGAGAAGAAGATATAT TCATTTAAGGAAAGCGCTTTAAGTTTATTTAATACTGTGAAAGATAAAGAGAAAATAGCC AATTTGCTTGAAAATATTTCAAATAATGTAAAAATTAAATTTCCTAATAGATTTATATAC TACAATTATTTATTTAATAAATGTAAATTAGACAGAATACTCATAGTAATAAACACACTG CTTTATTTATATTTAAATAGGGTTGATAAAAATGAAGAAAAAAAAATATTTTTTACTAAA GGGAATTTAGTTCAAATAAAAGATGAACAGAAAGCAGAAAAATATCAATGTAATTATTAT GATATATATAAAAATAAGAATTATAAAACACTATTTTCATCTATTTTTATCCATAAAAAT ATCTTACATTTATATTTTAATATGAGTTCACTAATGTCCATATACAGAATGATATCGCCA ATTTATTCAAATAGCCAAATACTTATTACATATTTATTATCTGGATTTCTTTCCAACTTA ATATCTTATATATACTATATGAAACCACTAAAAAAAGATATATTTTTAAAAGACATAATC GATCAAAATTATTATAGTCGTGATATACCTTTAAATAAGCCCAATAAAATAATATGTGGA AGCAGTTCAGCTATATATTCCCTATATGGAATGTATATAACACATATGATTTTTTTTTAT TTTAAAAATAATTATATTATGAATACAGGCTTCCTCTATAACATTTTCTATTCATTTTTA TCATCTTTACTTTTAGAAAATGTTAGTCATTTTAACCATATTTTAGGATTTATAAGTGGA TTTTTTATGTCTTCCACATTGATTTTGTTTGATAATAATTAA
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  • Fasta :-

    MNLSILLIFIIYITRGNSLHYNKINSKGITAFINTKNPILKNEYKVYRFKKYNNVEKKIY SFKESALSLFNTVKDKEKIANLLENISNNVKIKFPNRFIYYNYLFNKCKLDRILIVINTL LYLYLNRVDKNEEKKIFFTKGNLVQIKDEQKAEKYQCNYYDIYKNKNYKTLFSSIFIHKN ILHLYFNMSSLMSIYRMISPIYSNSQILITYLLSGFLSNLISYIYYMKPLKKDIFLKDII DQNYYSRDIPLNKPNKIICGSSSAIYSLYGMYITHMIFFYFKNNYIMNTGFLYNIFYSFL SSLLLENVSHFNHILGFISGFFMSSTLILFDNN

    No Results
No Results
No Results
IDSitePeptideScoreMethod
PCHAS_113410061 SKKIYSFKES0.994unsp

PCHAS_113410      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India