PCHAS_1143500 | 26S proteasome regulatory subunit RPN11, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0005515      

  • Computed_GO_Functions:  protein binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PCHAS_1143500OTHER0.9996880.0001670.000145
No Results

  • Fasta :-

    >PCHAS_1143500 MAGIPSSLRELFYSFSDGNGMSNEPLADTSEQVYISPLALLKILKHGRAGVPMEVMGLML GEIVDEYTIRIVDVFAMPQSGNSVSVEAVDPVYQTNMLEELKKTGRHEMVVGWYHSHPGF GCWLSGTDVNTQKSFEQLNPRTIGVVVDPIQSVKGKVVIDCFRLINPHILMLGQEPRQTT SNIGYLTKPTLTALVHGLNRNYYSIVINYRKNELEKNMLLNLHKDIWVNPLKLLDFDEQK KNTDETLESIKKLTSLYNKNLSNEMKKTREEILLENIGKIDAKKRIQNCVETLLNDSILT SIGTMANTLFF
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_1143500.fa Sequence name : PCHAS_1143500 Sequence length : 311 VALUES OF COMPUTED PARAMETERS Coef20 : 3.578 CoefTot : 0.119 ChDiff : -3 ZoneTo : 9 KR : 1 DE : 0 CleavSite : 19 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.071 1.400 -0.034 0.507 MesoH : -0.546 0.425 -0.367 0.247 MuHd_075 : 15.094 6.912 2.675 2.757 MuHd_095 : 34.739 23.809 8.700 7.213 MuHd_100 : 35.617 25.115 8.374 7.698 MuHd_105 : 31.388 22.999 7.043 7.162 Hmax_075 : 3.588 5.500 -0.348 4.020 Hmax_095 : 20.100 18.800 3.112 6.460 Hmax_100 : 20.500 19.200 3.367 7.120 Hmax_105 : 15.750 12.950 2.364 4.865 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7025 0.2975 DFMC : 0.7805 0.2195
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 311 PCHAS_1143500 MAGIPSSLRELFYSFSDGNGMSNEPLADTSEQVYISPLALLKILKHGRAGVPMEVMGLMLGEIVDEYTIRIVDVFAMPQS 80 GNSVSVEAVDPVYQTNMLEELKKTGRHEMVVGWYHSHPGFGCWLSGTDVNTQKSFEQLNPRTIGVVVDPIQSVKGKVVID 160 CFRLINPHILMLGQEPRQTTSNIGYLTKPTLTALVHGLNRNYYSIVINYRKNELEKNMLLNLHKDIWVNPLKLLDFDEQK 240 KNTDETLESIKKLTSLYNKNLSNEMKKTREEILLENIGKIDAKKRIQNCVETLLNDSILTSIGTMANTLFF 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ....................................................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_1143500 9 GIPSSLR|EL 0.079 . PCHAS_1143500 42 SPLALLK|IL 0.065 . PCHAS_1143500 45 ALLKILK|HG 0.070 . PCHAS_1143500 48 KILKHGR|AG 0.100 . PCHAS_1143500 70 VDEYTIR|IV 0.105 . PCHAS_1143500 102 NMLEELK|KT 0.069 . PCHAS_1143500 103 MLEELKK|TG 0.098 . PCHAS_1143500 106 ELKKTGR|HE 0.093 . PCHAS_1143500 133 TDVNTQK|SF 0.099 . PCHAS_1143500 141 FEQLNPR|TI 0.108 . PCHAS_1143500 154 DPIQSVK|GK 0.062 . PCHAS_1143500 156 IQSVKGK|VV 0.122 . PCHAS_1143500 163 VVIDCFR|LI 0.087 . PCHAS_1143500 177 MLGQEPR|QT 0.107 . PCHAS_1143500 188 NIGYLTK|PT 0.073 . PCHAS_1143500 200 LVHGLNR|NY 0.081 . PCHAS_1143500 210 SIVINYR|KN 0.089 . PCHAS_1143500 211 IVINYRK|NE 0.065 . PCHAS_1143500 216 RKNELEK|NM 0.060 . PCHAS_1143500 224 MLLNLHK|DI 0.070 . PCHAS_1143500 232 IWVNPLK|LL 0.061 . PCHAS_1143500 240 LDFDEQK|KN 0.063 . PCHAS_1143500 241 DFDEQKK|NT 0.093 . PCHAS_1143500 251 ETLESIK|KL 0.056 . PCHAS_1143500 252 TLESIKK|LT 0.092 . PCHAS_1143500 259 LTSLYNK|NL 0.072 . PCHAS_1143500 266 NLSNEMK|KT 0.081 . PCHAS_1143500 267 LSNEMKK|TR 0.117 . PCHAS_1143500 269 NEMKKTR|EE 0.094 . PCHAS_1143500 279 LLENIGK|ID 0.065 . PCHAS_1143500 283 IGKIDAK|KR 0.062 . PCHAS_1143500 284 GKIDAKK|RI 0.109 . PCHAS_1143500 285 KIDAKKR|IQ 0.224 . ____________________________^_________________

  • Fasta :-

    >PCHAS_1143500 ATGGCTGGAATTCCTTCTTCATTACGTGAACTTTTTTATTCCTTTTCCGACGGCAATGGA ATGTCAAATGAGCCATTAGCCGATACAAGTGAACAAGTTTATATTTCCCCTTTGGCTCTT CTTAAAATTTTGAAGCATGGACGAGCCGGAGTTCCTATGGAAGTTATGGGACTGATGCTT GGTGAAATTGTAGATGAATATACCATTAGGATTGTGGATGTATTTGCTATGCCTCAGTCA GGTAATAGTGTAAGTGTTGAAGCTGTTGATCCAGTATATCAAACTAATATGTTAGAAGAA TTAAAAAAAACAGGAAGGCATGAAATGGTTGTTGGATGGTACCATTCTCACCCTGGTTTT GGATGTTGGTTATCTGGAACTGATGTTAATACTCAAAAAAGTTTTGAACAATTAAATCCA AGAACAATTGGTGTTGTTGTTGATCCAATACAATCAGTTAAAGGAAAAGTTGTTATCGAT TGCTTTCGATTAATTAATCCTCATATACTTATGTTAGGTCAAGAACCTAGACAAACAACA TCAAACATTGGATATTTAACAAAGCCAACATTAACTGCTTTAGTTCATGGATTGAATAGA AATTATTATTCAATAGTTATTAATTATAGAAAAAATGAATTAGAAAAAAATATGCTTTTA AATTTACATAAAGACATTTGGGTTAACCCTTTAAAGCTACTTGACTTTGATGAACAAAAA AAAAATACTGATGAAACTTTAGAGAGTATTAAAAAATTAACAAGCTTATATAACAAAAAT TTAAGTAATGAAATGAAAAAAACACGTGAAGAAATCCTTTTAGAAAATATTGGAAAAATA GATGCAAAAAAGAGAATACAAAATTGTGTAGAAACACTACTAAATGATTCTATCCTTACT TCCATTGGTACCATGGCAAATACCCTATTTTTTTAG
  • Download Fasta

  • Fasta :-

    MAGIPSSLRELFYSFSDGNGMSNEPLADTSEQVYISPLALLKILKHGRAGVPMEVMGLML GEIVDEYTIRIVDVFAMPQSGNSVSVEAVDPVYQTNMLEELKKTGRHEMVVGWYHSHPGF GCWLSGTDVNTQKSFEQLNPRTIGVVVDPIQSVKGKVVIDCFRLINPHILMLGQEPRQTT SNIGYLTKPTLTALVHGLNRNYYSIVINYRKNELEKNMLLNLHKDIWVNPLKLLDFDEQK KNTDETLESIKKLTSLYNKNLSNEMKKTREEILLENIGKIDAKKRIQNCVETLLNDSILT SIGTMANTLFF

  • title: MPN+ (JAMM) motif
  • coordinates: E54,H115,H117,S125,D128
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PCHAS_114350      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India