PCHAS_1208500 | metalloprotease, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:  GO:0008237      

  • Curated_GO_Functions:  metallopeptidase activity      

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PCHAS_1208500OTHER0.9999060.0000470.000048
No Results

  • Fasta :-

    >PCHAS_1208500 MSVKNLDDIRYKIHRVQALNDNDEKAKAILNKAAEKVQPIMKKRRFLVGLLSEFLPKNPN LLGLNIIGKSEIKIRLRKKPGGEIFHFNDIMGTLLHELVHLVHRRHDKKFYALLDKLVFE YNELYIYNNINNSYGDNKNKSLANNIDENSDSYKNNASSKNNLIILIDDDFKINNHKKSS LCYSQPKHMAAQAAERRLINNFINNDGEIINISLESCLTEKQRENLIKRKKEYDDKTCLV NNDVIIIDSMSTIPKNNKRKKLTELENSNYKKNNGDNNFCNNNDCLEIISSNQPNTKNKK TLKSCSKNLDITTPECISIISDNITHIKSQKNIVEYILDDNTNTDINSTSRQ
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_1208500.fa Sequence name : PCHAS_1208500 Sequence length : 352 VALUES OF COMPUTED PARAMETERS Coef20 : 3.938 CoefTot : -0.013 ChDiff : 11 ZoneTo : 6 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.082 1.035 -0.064 0.415 MesoH : -1.472 0.060 -0.678 0.096 MuHd_075 : 6.026 5.250 1.732 3.189 MuHd_095 : 30.183 15.481 6.923 5.459 MuHd_100 : 32.306 20.959 9.080 6.350 MuHd_105 : 30.992 25.396 10.396 6.655 Hmax_075 : -10.267 4.400 -4.183 1.720 Hmax_095 : 5.863 9.713 -0.437 3.351 Hmax_100 : 3.300 9.200 -0.635 3.190 Hmax_105 : 17.267 23.800 4.536 6.907 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7475 0.2525 DFMC : 0.9293 0.0707
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 352 PCHAS_1208500 MSVKNLDDIRYKIHRVQALNDNDEKAKAILNKAAEKVQPIMKKRRFLVGLLSEFLPKNPNLLGLNIIGKSEIKIRLRKKP 80 GGEIFHFNDIMGTLLHELVHLVHRRHDKKFYALLDKLVFEYNELYIYNNINNSYGDNKNKSLANNIDENSDSYKNNASSK 160 NNLIILIDDDFKINNHKKSSLCYSQPKHMAAQAAERRLINNFINNDGEIINISLESCLTEKQRENLIKRKKEYDDKTCLV 240 NNDVIIIDSMSTIPKNNKRKKLTELENSNYKKNNGDNNFCNNNDCLEIISSNQPNTKNKKTLKSCSKNLDITTPECISII 320 SDNITHIKSQKNIVEYILDDNTNTDINSTSRQ 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................ 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_1208500 4 ---MSVK|NL 0.072 . PCHAS_1208500 10 KNLDDIR|YK 0.080 . PCHAS_1208500 12 LDDIRYK|IH 0.058 . PCHAS_1208500 15 IRYKIHR|VQ 0.081 . PCHAS_1208500 25 LNDNDEK|AK 0.058 . PCHAS_1208500 27 DNDEKAK|AI 0.067 . PCHAS_1208500 32 AKAILNK|AA 0.135 . PCHAS_1208500 36 LNKAAEK|VQ 0.056 . PCHAS_1208500 42 KVQPIMK|KR 0.057 . PCHAS_1208500 43 VQPIMKK|RR 0.081 . PCHAS_1208500 44 QPIMKKR|RF 0.229 . PCHAS_1208500 45 PIMKKRR|FL 0.251 . PCHAS_1208500 57 LSEFLPK|NP 0.059 . PCHAS_1208500 69 GLNIIGK|SE 0.085 . PCHAS_1208500 73 IGKSEIK|IR 0.056 . PCHAS_1208500 75 KSEIKIR|LR 0.092 . PCHAS_1208500 77 EIKIRLR|KK 0.082 . PCHAS_1208500 78 IKIRLRK|KP 0.306 . PCHAS_1208500 79 KIRLRKK|PG 0.145 . PCHAS_1208500 104 LVHLVHR|RH 0.095 . PCHAS_1208500 105 VHLVHRR|HD 0.126 . PCHAS_1208500 108 VHRRHDK|KF 0.153 . PCHAS_1208500 109 HRRHDKK|FY 0.114 . PCHAS_1208500 116 FYALLDK|LV 0.066 . PCHAS_1208500 138 NSYGDNK|NK 0.064 . PCHAS_1208500 140 YGDNKNK|SL 0.083 . PCHAS_1208500 154 ENSDSYK|NN 0.074 . PCHAS_1208500 160 KNNASSK|NN 0.073 . PCHAS_1208500 172 LIDDDFK|IN 0.059 . PCHAS_1208500 177 FKINNHK|KS 0.062 . PCHAS_1208500 178 KINNHKK|SS 0.151 . PCHAS_1208500 187 LCYSQPK|HM 0.068 . PCHAS_1208500 196 AAQAAER|RL 0.079 . PCHAS_1208500 197 AQAAERR|LI 0.122 . PCHAS_1208500 221 ESCLTEK|QR 0.059 . PCHAS_1208500 223 CLTEKQR|EN 0.084 . PCHAS_1208500 228 QRENLIK|RK 0.071 . PCHAS_1208500 229 RENLIKR|KK 0.164 . PCHAS_1208500 230 ENLIKRK|KE 0.076 . PCHAS_1208500 231 NLIKRKK|EY 0.125 . PCHAS_1208500 236 KKEYDDK|TC 0.058 . PCHAS_1208500 255 SMSTIPK|NN 0.070 . PCHAS_1208500 258 TIPKNNK|RK 0.054 . PCHAS_1208500 259 IPKNNKR|KK 0.187 . PCHAS_1208500 260 PKNNKRK|KL 0.129 . PCHAS_1208500 261 KNNKRKK|LT 0.144 . PCHAS_1208500 271 LENSNYK|KN 0.059 . PCHAS_1208500 272 ENSNYKK|NN 0.168 . PCHAS_1208500 297 SNQPNTK|NK 0.065 . PCHAS_1208500 299 QPNTKNK|KT 0.072 . PCHAS_1208500 300 PNTKNKK|TL 0.081 . PCHAS_1208500 303 KNKKTLK|SC 0.115 . PCHAS_1208500 307 TLKSCSK|NL 0.067 . PCHAS_1208500 328 DNITHIK|SQ 0.080 . PCHAS_1208500 331 THIKSQK|NI 0.069 . PCHAS_1208500 351 DINSTSR|Q- 0.091 . ____________________________^_________________

  • Fasta :-

    >PCHAS_1208500 ATGAGTGTTAAAAATTTGGATGATATAAGATATAAAATTCACAGAGTTCAAGCTTTAAAT GACAATGATGAAAAAGCTAAGGCGATATTAAATAAGGCTGCTGAAAAGGTGCAGCCAATT ATGAAAAAAAGACGTTTTTTGGTTGGATTACTTTCCGAATTTTTACCAAAAAATCCAAAC TTGCTAGGTCTCAACATTATAGGGAAATCTGAAATTAAGATAAGACTTCGAAAAAAACCA GGGGGAGAAATATTTCACTTTAATGATATAATGGGAACATTATTGCATGAATTAGTGCAT TTAGTACATCGACGGCACGATAAAAAATTTTACGCATTATTGGATAAGTTAGTTTTTGAA TATAATGAATTGTATATATATAACAATATAAATAATAGTTATGGGGATAATAAAAATAAG AGTTTAGCTAACAATATCGATGAAAATAGTGATAGTTATAAAAATAATGCTAGCAGTAAA AATAATTTAATAATATTAATTGATGATGATTTCAAAATTAACAATCATAAGAAAAGTTCT CTTTGTTATTCTCAACCCAAACATATGGCTGCACAAGCAGCAGAAAGAAGATTAATAAAC AATTTTATAAATAATGATGGGGAAATAATAAATATATCTCTTGAAAGTTGTTTAACAGAA AAACAACGTGAAAACTTAATAAAAAGGAAAAAAGAATATGATGATAAAACATGTTTAGTA AATAATGACGTAATTATAATTGATTCAATGAGTACTATTCCGAAAAATAACAAAAGGAAA AAATTAACGGAGTTGGAAAATAGCAATTACAAGAAAAATAATGGAGATAACAACTTTTGC AATAATAATGATTGTTTAGAAATTATTAGTTCAAATCAACCAAACACGAAAAATAAAAAG ACATTAAAATCATGTTCAAAAAATTTAGATATAACAACCCCAGAATGCATATCAATTATT AGTGATAATATTACACATATTAAATCACAAAAAAATATTGTAGAATATATATTAGATGAT AACACGAATACTGATATCAATTCTACAAGTAGGCAATGA
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  • Fasta :-

    MSVKNLDDIRYKIHRVQALNDNDEKAKAILNKAAEKVQPIMKKRRFLVGLLSEFLPKNPN LLGLNIIGKSEIKIRLRKKPGGEIFHFNDIMGTLLHELVHLVHRRHDKKFYALLDKLVFE YNELYIYNNINNSYGDNKNKSLANNIDENSDSYKNNASSKNNLIILIDDDFKINNHKKSS LCYSQPKHMAAQAAERRLINNFINNDGEIINISLESCLTEKQRENLIKRKKEYDDKTCLV NNDVIIIDSMSTIPKNNKRKKLTELENSNYKKNNGDNNFCNNNDCLEIISSNQPNTKNKK TLKSCSKNLDITTPECISIISDNITHIKSQKNIVEYILDDNTNTDINSTSRQ

    No Results
  • title: Zn binding site
  • coordinates: H96,H100,H106
No Results
No Results
IDSitePeptideScoreMethod
PCHAS_1208500152 SENSDSYKNN0.994unsp

PCHAS_120850      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India