PCHAS_1210500 | proteasome subunit beta type-5, putative

_IDPredictionOTHERSPmTPCS_Position
PCHAS_1210500OTHER0.9999230.0000380.000038
No Results

  • Fasta :-

    >PCHAS_1210500 MMEYSTDFMSQIDNLINDEEENVNTTDELEFCLAPISVPRDFIKYAKTENKKLFDFHKGT TTLAFKFKEGIIVAVDSRASMGSFISSQNVEKIIEINKHILGTMAGGAADCFYWEKYLGQ IIKIYELRNNEKISVRAASTILSNILYQYKGYGLCCGIILSGYDHTGFNMFYIDDEGKKV EGNLFSCGSGSTYAYSILDTAYDYNLSVEEAVELGRNAIYHATFRDGGSGGKVRVFYIHK DGYSKIIEGEDVYDLHYHYTNPSQKDQYVM
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_1210500.fa Sequence name : PCHAS_1210500 Sequence length : 270 VALUES OF COMPUTED PARAMETERS Coef20 : 3.234 CoefTot : 0.000 ChDiff : -12 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.965 1.071 0.164 0.470 MesoH : -0.461 0.268 -0.289 0.226 MuHd_075 : 31.398 13.160 7.504 2.859 MuHd_095 : 39.184 26.282 10.617 7.762 MuHd_100 : 46.364 30.712 12.297 8.595 MuHd_105 : 42.101 29.054 11.295 7.777 Hmax_075 : 7.000 3.200 -1.553 2.220 Hmax_095 : 16.600 15.400 2.623 5.820 Hmax_100 : 20.700 18.600 3.145 6.200 Hmax_105 : 20.400 18.600 3.171 6.200 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7601 0.2399 DFMC : 0.8205 0.1795
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 270 PCHAS_1210500 MMEYSTDFMSQIDNLINDEEENVNTTDELEFCLAPISVPRDFIKYAKTENKKLFDFHKGTTTLAFKFKEGIIVAVDSRAS 80 MGSFISSQNVEKIIEINKHILGTMAGGAADCFYWEKYLGQIIKIYELRNNEKISVRAASTILSNILYQYKGYGLCCGIIL 160 SGYDHTGFNMFYIDDEGKKVEGNLFSCGSGSTYAYSILDTAYDYNLSVEEAVELGRNAIYHATFRDGGSGGKVRVFYIHK 240 DGYSKIIEGEDVYDLHYHYTNPSQKDQYVM 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .............................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_1210500 40 APISVPR|DF 0.148 . PCHAS_1210500 44 VPRDFIK|YA 0.093 . PCHAS_1210500 47 DFIKYAK|TE 0.066 . PCHAS_1210500 51 YAKTENK|KL 0.069 . PCHAS_1210500 52 AKTENKK|LF 0.084 . PCHAS_1210500 58 KLFDFHK|GT 0.075 . PCHAS_1210500 66 TTTLAFK|FK 0.073 . PCHAS_1210500 68 TLAFKFK|EG 0.078 . PCHAS_1210500 78 IVAVDSR|AS 0.100 . PCHAS_1210500 92 SSQNVEK|II 0.083 . PCHAS_1210500 98 KIIEINK|HI 0.061 . PCHAS_1210500 116 DCFYWEK|YL 0.089 . PCHAS_1210500 123 YLGQIIK|IY 0.062 . PCHAS_1210500 128 IKIYELR|NN 0.090 . PCHAS_1210500 132 ELRNNEK|IS 0.063 . PCHAS_1210500 136 NEKISVR|AA 0.145 . PCHAS_1210500 150 NILYQYK|GY 0.066 . PCHAS_1210500 178 YIDDEGK|KV 0.078 . PCHAS_1210500 179 IDDEGKK|VE 0.080 . PCHAS_1210500 216 EAVELGR|NA 0.076 . PCHAS_1210500 225 IYHATFR|DG 0.149 . PCHAS_1210500 232 DGGSGGK|VR 0.050 . PCHAS_1210500 234 GSGGKVR|VF 0.098 . PCHAS_1210500 240 RVFYIHK|DG 0.064 . PCHAS_1210500 245 HKDGYSK|II 0.063 . PCHAS_1210500 265 YTNPSQK|DQ 0.075 . ____________________________^_________________

  • Fasta :-

    >PCHAS_1210500 ATGATGGAATACAGTACTGACTTTATGAGCCAAATTGATAATTTGATAAACGATGAGGAA GAAAATGTCAACACTACTGATGAACTTGAATTTTGTTTAGCCCCAATAAGTGTTCCAAGA GATTTCATAAAATATGCAAAAACAGAAAATAAAAAATTATTTGATTTTCATAAGGGTACT ACAACATTAGCATTTAAATTTAAGGAAGGTATTATTGTTGCAGTGGATTCACGAGCTTCT ATGGGATCTTTTATATCTTCTCAAAATGTTGAAAAAATTATTGAAATAAATAAACATATA TTAGGAACCATGGCAGGTGGAGCAGCTGATTGTTTTTATTGGGAAAAATATTTAGGTCAA ATAATTAAAATATATGAATTAAGAAATAATGAAAAAATATCAGTTAGAGCAGCTAGTACA ATATTAAGTAATATTTTATATCAATACAAAGGATATGGTTTATGTTGTGGTATAATATTA AGTGGTTATGATCATACAGGTTTTAATATGTTTTATATTGATGATGAAGGTAAAAAAGTT GAAGGAAATTTATTTAGTTGTGGTAGTGGTAGTACATATGCTTATTCGATTTTGGATACC GCTTATGATTATAATTTATCAGTTGAAGAAGCAGTTGAACTTGGTAGAAATGCAATTTAT CATGCCACATTTAGAGATGGAGGTTCAGGTGGAAAAGTAAGAGTTTTTTATATACATAAA GATGGATATAGTAAAATTATTGAAGGTGAAGATGTATATGATTTACACTATCACTATACA AACCCATCACAAAAGGATCAATATGTTATGTAA
  • Download Fasta

  • Fasta :-

    MMEYSTDFMSQIDNLINDEEENVNTTDELEFCLAPISVPRDFIKYAKTENKKLFDFHKGT TTLAFKFKEGIIVAVDSRASMGSFISSQNVEKIIEINKHILGTMAGGAADCFYWEKYLGQ IIKIYELRNNEKISVRAASTILSNILYQYKGYGLCCGIILSGYDHTGFNMFYIDDEGKKV EGNLFSCGSGSTYAYSILDTAYDYNLSVEEAVELGRNAIYHATFRDGGSGGKVRVFYIHK DGYSKIIEGEDVYDLHYHYTNPSQKDQYVM

  • title: active site
  • coordinates: T60,D76,R78,K92,S189,D226,S229,G230
No Results
No Results
IDSitePeptideScoreMethod
PCHAS_1210500263 SYTNPSQKDQ0.996unsp

PCHAS_121050      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India