PCHAS_1223700 | proteasome subunit alpha type-6, putative

_IDPredictionOTHERSPmTPCS_Position
PCHAS_1223700OTHER0.9994940.0002660.000240
No Results

  • Fasta :-

    >PCHAS_1223700 MVRQSQSMYDRHLTIFSPDGNLYQIEYAIKAVKNTNITSLGVKGENCAVIISQKKMATQY ITQDKLLDYNNITNIYNISDEIGCSMVGMPGDCLSMVYKARSEASEYLYNNGYNLNVETL CRNICDKIQVFTQHAYMRLHACSGILIGMNEENKPELYKFDPAGFCAGYRACVIGNKEQE SISILERLLEKRKKKIQQETLEEDIQNTIILAIEALQAILAFDLKANEIEMAIVSKTNPN FVQISEKEIDNYLTFIAERD
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_1223700.fa Sequence name : PCHAS_1223700 Sequence length : 260 VALUES OF COMPUTED PARAMETERS Coef20 : 3.774 CoefTot : -0.108 ChDiff : -7 ZoneTo : 9 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.141 1.882 0.245 0.655 MesoH : -0.829 0.078 -0.388 0.136 MuHd_075 : 3.995 3.733 1.471 0.924 MuHd_095 : 33.034 14.749 5.718 7.001 MuHd_100 : 31.622 17.345 5.763 7.429 MuHd_105 : 25.289 15.162 4.748 6.403 Hmax_075 : 2.800 0.600 -2.081 1.423 Hmax_095 : 9.450 5.775 -0.465 3.098 Hmax_100 : 10.500 7.400 -0.667 3.720 Hmax_105 : 9.700 8.100 -0.439 4.020 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9623 0.0377 DFMC : 0.9833 0.0167
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 260 PCHAS_1223700 MVRQSQSMYDRHLTIFSPDGNLYQIEYAIKAVKNTNITSLGVKGENCAVIISQKKMATQYITQDKLLDYNNITNIYNISD 80 EIGCSMVGMPGDCLSMVYKARSEASEYLYNNGYNLNVETLCRNICDKIQVFTQHAYMRLHACSGILIGMNEENKPELYKF 160 DPAGFCAGYRACVIGNKEQESISILERLLEKRKKKIQQETLEEDIQNTIILAIEALQAILAFDLKANEIEMAIVSKTNPN 240 FVQISEKEIDNYLTFIAERD 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_1223700 3 ----MVR|QS 0.084 . PCHAS_1223700 11 SQSMYDR|HL 0.107 . PCHAS_1223700 30 QIEYAIK|AV 0.070 . PCHAS_1223700 33 YAIKAVK|NT 0.059 . PCHAS_1223700 43 ITSLGVK|GE 0.063 . PCHAS_1223700 54 AVIISQK|KM 0.060 . PCHAS_1223700 55 VIISQKK|MA 0.135 . PCHAS_1223700 65 QYITQDK|LL 0.064 . PCHAS_1223700 99 CLSMVYK|AR 0.081 . PCHAS_1223700 101 SMVYKAR|SE 0.126 . PCHAS_1223700 122 NVETLCR|NI 0.096 . PCHAS_1223700 127 CRNICDK|IQ 0.066 . PCHAS_1223700 138 TQHAYMR|LH 0.097 . PCHAS_1223700 154 GMNEENK|PE 0.058 . PCHAS_1223700 159 NKPELYK|FD 0.070 . PCHAS_1223700 170 GFCAGYR|AC 0.083 . PCHAS_1223700 177 ACVIGNK|EQ 0.056 . PCHAS_1223700 187 SISILER|LL 0.096 . PCHAS_1223700 191 LERLLEK|RK 0.060 . PCHAS_1223700 192 ERLLEKR|KK 0.188 . PCHAS_1223700 193 RLLEKRK|KK 0.093 . PCHAS_1223700 194 LLEKRKK|KI 0.122 . PCHAS_1223700 195 LEKRKKK|IQ 0.283 . PCHAS_1223700 225 ILAFDLK|AN 0.068 . PCHAS_1223700 236 EMAIVSK|TN 0.061 . PCHAS_1223700 247 FVQISEK|EI 0.075 . PCHAS_1223700 259 LTFIAER|D- 0.096 . ____________________________^_________________

  • Fasta :-

    >PCHAS_1223700 ATGGTGCGACAATCACAGAGTATGTATGATAGGCATTTAACCATCTTTTCTCCTGATGGA AATCTTTATCAAATAGAATATGCTATAAAGGCAGTTAAAAATACCAACATAACATCCTTA GGTGTAAAGGGAGAAAATTGTGCTGTCATTATTTCTCAAAAGAAAATGGCAACACAATAT ATAACTCAAGATAAGTTATTAGATTATAATAATATAACAAATATATATAATATATCTGAT GAAATCGGATGTTCCATGGTTGGTATGCCTGGAGATTGTCTTAGTATGGTTTACAAAGCC AGATCCGAGGCTTCTGAATATTTATATAATAATGGATACAATTTAAATGTTGAAACATTA TGTAGAAATATTTGTGATAAAATTCAAGTATTTACCCAACATGCTTATATGAGACTACAT GCTTGCAGTGGAATACTCATTGGAATGAATGAAGAGAATAAACCTGAACTTTATAAATTT GATCCAGCAGGTTTTTGTGCTGGGTATAGAGCATGTGTTATTGGAAACAAAGAACAAGAA AGTATAAGTATTTTAGAAAGATTATTGGAAAAGAGAAAAAAGAAAATACAACAAGAAACA TTAGAAGAAGACATACAAAACACTATTATACTAGCTATTGAAGCATTACAAGCTATTCTT GCTTTTGATTTAAAAGCTAATGAAATTGAAATGGCTATCGTGTCAAAAACAAATCCAAAC TTCGTTCAAATAAGTGAAAAAGAAATAGATAATTACTTAACTTTTATCGCGGAAAGAGAT TAA
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  • Fasta :-

    MVRQSQSMYDRHLTIFSPDGNLYQIEYAIKAVKNTNITSLGVKGENCAVIISQKKMATQY ITQDKLLDYNNITNIYNISDEIGCSMVGMPGDCLSMVYKARSEASEYLYNNGYNLNVETL CRNICDKIQVFTQHAYMRLHACSGILIGMNEENKPELYKFDPAGFCAGYRACVIGNKEQE SISILERLLEKRKKKIQQETLEEDIQNTIILAIEALQAILAFDLKANEIEMAIVSKTNPN FVQISEKEIDNYLTFIAERD

  • title: active site
  • coordinates: I37,Q53,K55,N74,N176
No Results
No Results
IDSitePeptideScoreMethod
PCHAS_1223700245 SFVQISEKEI0.991unsp

PCHAS_122370      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India