PCHAS_1226800 | methionine aminopeptidase 1c, putative

_IDPredictionOTHERSPmTPCS_Position
PCHAS_1226800SP0.0195160.9795940.000891CS pos: 17-18. FLC-KK. Pr: 0.7512
No Results

  • Fasta :-

    >PCHAS_1226800 MNVHIFLLLLFCGTFLCKKNSNNSNFRIIHQNGTRGNRKRNVKCVREKKHYNYIHPNEIS KNKNDIRYHHYNFLITTCPQKKKLLAKKEKSKRQYNLNSSGEGFSNTVHTNVKKNTNDYS EEQLPTYHKYIENFKTRKIIHPSIRITDHDKKFMKCKESYNKLYSHLTETELFENFSYVG RQRKGILSPKYYLPKYIERPNYHKTGTPIYVNYENNSKSKECISMRNSNNETENGHKTYS TTNKYEYDNVKTDYDIEMISRNCKFARELMDDISYIICEGITTNDIDIYILNKCVNNGFY PSPLNYHLFPKSSCISINEILCHGIPDNNVLYENDVVKVDISVYKDGYHADMCESFIVQK ISKEEKKKRKKNYDYIYLNDKLRTKHTKYILKYNFDLTTNKIVKKGKYPSVRKVRYNPPN SKEHENEYIEEYDDNTNSVLGESPYAHSYYTHNGGPNNVSENYEDELENFHRRYDEDFIF NPKKGEVYNNLQQYIYQKGMEKDKNRKETNRKFEFFDTSNQGIANMKKFMFEKNRDLIKT AYDCTMEAISICKPGVPFKNIAKVMDDYLKKKNNSYQYYSIVPNLCGHNIGKNFHEEPFI IHTLNDDDRKMCENLVFTIEPIITERSCDFITWPDNWTLSNSRYYYSAQFEHTILITKNG AKILTQKTDTSPKYIWEDEGN
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_1226800.fa Sequence name : PCHAS_1226800 Sequence length : 681 VALUES OF COMPUTED PARAMETERS Coef20 : 4.244 CoefTot : -1.398 ChDiff : 19 ZoneTo : 46 KR : 9 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.918 2.071 0.337 0.710 MesoH : -0.870 0.176 -0.393 0.208 MuHd_075 : 28.510 18.787 9.313 6.874 MuHd_095 : 38.036 18.306 10.220 9.383 MuHd_100 : 30.657 14.076 7.470 8.255 MuHd_105 : 24.529 14.589 5.531 7.153 Hmax_075 : 10.000 10.100 7.236 3.552 Hmax_095 : -0.800 0.400 1.439 2.020 Hmax_100 : -3.800 -2.700 0.628 1.600 Hmax_105 : -0.933 1.517 -3.757 2.333 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.3538 0.6462 DFMC : 0.2766 0.7234 This protein is probably imported in mitochondria. f(Ser) = 0.0435 f(Arg) = 0.1087 CMi = 0.19569 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 681 PCHAS_1226800 MNVHIFLLLLFCGTFLCKKNSNNSNFRIIHQNGTRGNRKRNVKCVREKKHYNYIHPNEISKNKNDIRYHHYNFLITTCPQ 80 KKKLLAKKEKSKRQYNLNSSGEGFSNTVHTNVKKNTNDYSEEQLPTYHKYIENFKTRKIIHPSIRITDHDKKFMKCKESY 160 NKLYSHLTETELFENFSYVGRQRKGILSPKYYLPKYIERPNYHKTGTPIYVNYENNSKSKECISMRNSNNETENGHKTYS 240 TTNKYEYDNVKTDYDIEMISRNCKFARELMDDISYIICEGITTNDIDIYILNKCVNNGFYPSPLNYHLFPKSSCISINEI 320 LCHGIPDNNVLYENDVVKVDISVYKDGYHADMCESFIVQKISKEEKKKRKKNYDYIYLNDKLRTKHTKYILKYNFDLTTN 400 KIVKKGKYPSVRKVRYNPPNSKEHENEYIEEYDDNTNSVLGESPYAHSYYTHNGGPNNVSENYEDELENFHRRYDEDFIF 480 NPKKGEVYNNLQQYIYQKGMEKDKNRKETNRKFEFFDTSNQGIANMKKFMFEKNRDLIKTAYDCTMEAISICKPGVPFKN 560 IAKVMDDYLKKKNNSYQYYSIVPNLCGHNIGKNFHEEPFIIHTLNDDDRKMCENLVFTIEPIITERSCDFITWPDNWTLS 640 NSRYYYSAQFEHTILITKNGAKILTQKTDTSPKYIWEDEGN 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ......................................... 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_1226800 18 CGTFLCK|KN 0.056 . PCHAS_1226800 19 GTFLCKK|NS 0.075 . PCHAS_1226800 27 SNNSNFR|II 0.146 . PCHAS_1226800 35 IHQNGTR|GN 0.084 . PCHAS_1226800 38 NGTRGNR|KR 0.119 . PCHAS_1226800 39 GTRGNRK|RN 0.077 . PCHAS_1226800 40 TRGNRKR|NV 0.489 . PCHAS_1226800 43 NRKRNVK|CV 0.239 . PCHAS_1226800 46 RNVKCVR|EK 0.086 . PCHAS_1226800 48 VKCVREK|KH 0.062 . PCHAS_1226800 49 KCVREKK|HY 0.280 . PCHAS_1226800 61 HPNEISK|NK 0.074 . PCHAS_1226800 63 NEISKNK|ND 0.063 . PCHAS_1226800 67 KNKNDIR|YH 0.098 . PCHAS_1226800 81 ITTCPQK|KK 0.054 . PCHAS_1226800 82 TTCPQKK|KL 0.095 . PCHAS_1226800 83 TCPQKKK|LL 0.145 . PCHAS_1226800 87 KKKLLAK|KE 0.064 . PCHAS_1226800 88 KKLLAKK|EK 0.107 . PCHAS_1226800 90 LLAKKEK|SK 0.105 . PCHAS_1226800 92 AKKEKSK|RQ 0.061 . PCHAS_1226800 93 KKEKSKR|QY 0.163 . PCHAS_1226800 113 TVHTNVK|KN 0.060 . PCHAS_1226800 114 VHTNVKK|NT 0.092 . PCHAS_1226800 129 QLPTYHK|YI 0.066 . PCHAS_1226800 135 KYIENFK|TR 0.057 . PCHAS_1226800 137 IENFKTR|KI 0.095 . PCHAS_1226800 138 ENFKTRK|II 0.112 . PCHAS_1226800 145 IIHPSIR|IT 0.119 . PCHAS_1226800 151 RITDHDK|KF 0.062 . PCHAS_1226800 152 ITDHDKK|FM 0.100 . PCHAS_1226800 155 HDKKFMK|CK 0.073 . PCHAS_1226800 157 KKFMKCK|ES 0.082 . PCHAS_1226800 162 CKESYNK|LY 0.066 . PCHAS_1226800 181 NFSYVGR|QR 0.097 . PCHAS_1226800 183 SYVGRQR|KG 0.074 . PCHAS_1226800 184 YVGRQRK|GI 0.175 . PCHAS_1226800 190 KGILSPK|YY 0.064 . PCHAS_1226800 195 PKYYLPK|YI 0.075 . PCHAS_1226800 199 LPKYIER|PN 0.098 . PCHAS_1226800 204 ERPNYHK|TG 0.062 . PCHAS_1226800 218 NYENNSK|SK 0.065 . PCHAS_1226800 220 ENNSKSK|EC 0.073 . PCHAS_1226800 226 KECISMR|NS 0.090 . PCHAS_1226800 237 ETENGHK|TY 0.061 . PCHAS_1226800 244 TYSTTNK|YE 0.089 . PCHAS_1226800 251 YEYDNVK|TD 0.069 . PCHAS_1226800 261 DIEMISR|NC 0.072 . PCHAS_1226800 264 MISRNCK|FA 0.252 . PCHAS_1226800 267 RNCKFAR|EL 0.146 . PCHAS_1226800 293 DIYILNK|CV 0.069 . PCHAS_1226800 311 NYHLFPK|SS 0.107 . PCHAS_1226800 338 YENDVVK|VD 0.065 . PCHAS_1226800 345 VDISVYK|DG 0.080 . PCHAS_1226800 360 ESFIVQK|IS 0.060 . PCHAS_1226800 363 IVQKISK|EE 0.059 . PCHAS_1226800 366 KISKEEK|KK 0.071 . PCHAS_1226800 367 ISKEEKK|KR 0.098 . PCHAS_1226800 368 SKEEKKK|RK 0.091 . PCHAS_1226800 369 KEEKKKR|KK 0.155 . PCHAS_1226800 370 EEKKKRK|KN 0.098 . PCHAS_1226800 371 EKKKRKK|NY 0.106 . PCHAS_1226800 381 YIYLNDK|LR 0.055 . PCHAS_1226800 383 YLNDKLR|TK 0.097 . PCHAS_1226800 385 NDKLRTK|HT 0.065 . PCHAS_1226800 388 LRTKHTK|YI 0.091 . PCHAS_1226800 392 HTKYILK|YN 0.069 . PCHAS_1226800 401 FDLTTNK|IV 0.065 . PCHAS_1226800 404 TTNKIVK|KG 0.054 . PCHAS_1226800 405 TNKIVKK|GK 0.138 . PCHAS_1226800 407 KIVKKGK|YP 0.072 . PCHAS_1226800 412 GKYPSVR|KV 0.143 . PCHAS_1226800 413 KYPSVRK|VR 0.061 . PCHAS_1226800 415 PSVRKVR|YN 0.268 . PCHAS_1226800 422 YNPPNSK|EH 0.058 . PCHAS_1226800 472 ELENFHR|RY 0.086 . PCHAS_1226800 473 LENFHRR|YD 0.249 . PCHAS_1226800 483 DFIFNPK|KG 0.058 . PCHAS_1226800 484 FIFNPKK|GE 0.088 . PCHAS_1226800 498 QQYIYQK|GM 0.067 . PCHAS_1226800 502 YQKGMEK|DK 0.069 . PCHAS_1226800 504 KGMEKDK|NR 0.059 . PCHAS_1226800 506 MEKDKNR|KE 0.085 . PCHAS_1226800 507 EKDKNRK|ET 0.082 . PCHAS_1226800 511 NRKETNR|KF 0.099 . PCHAS_1226800 512 RKETNRK|FE 0.076 . PCHAS_1226800 527 QGIANMK|KF 0.059 . PCHAS_1226800 528 GIANMKK|FM 0.128 . PCHAS_1226800 533 KKFMFEK|NR 0.064 . PCHAS_1226800 535 FMFEKNR|DL 0.111 . PCHAS_1226800 539 KNRDLIK|TA 0.076 . PCHAS_1226800 553 EAISICK|PG 0.055 . PCHAS_1226800 559 KPGVPFK|NI 0.087 . PCHAS_1226800 563 PFKNIAK|VM 0.063 . PCHAS_1226800 570 VMDDYLK|KK 0.054 . PCHAS_1226800 571 MDDYLKK|KN 0.083 . PCHAS_1226800 572 DDYLKKK|NN 0.110 . PCHAS_1226800 592 CGHNIGK|NF 0.069 . PCHAS_1226800 609 TLNDDDR|KM 0.096 . PCHAS_1226800 610 LNDDDRK|MC 0.089 . PCHAS_1226800 626 EPIITER|SC 0.118 . PCHAS_1226800 643 WTLSNSR|YY 0.084 . PCHAS_1226800 658 HTILITK|NG 0.061 . PCHAS_1226800 662 ITKNGAK|IL 0.075 . PCHAS_1226800 667 AKILTQK|TD 0.056 . PCHAS_1226800 673 KTDTSPK|YI 0.076 . ____________________________^_________________

  • Fasta :-

    >PCHAS_1226800 ATGAACGTTCATATTTTTTTGTTACTGCTTTTCTGTGGTACATTTTTATGCAAAAAAAAT AGTAATAATAGCAATTTTCGAATTATACACCAAAATGGGACAAGAGGGAACAGAAAAAGA AATGTAAAATGTGTAAGGGAAAAGAAGCATTATAATTATATACATCCCAATGAAATTAGT AAAAATAAAAATGACATCCGTTATCATCACTACAACTTTCTTATAACTACATGCCCACAA AAAAAAAAACTGCTAGCCAAAAAAGAAAAATCTAAAAGGCAATATAACCTTAACAGTTCA GGTGAAGGTTTTTCAAACACAGTCCATACTAATGTTAAAAAAAACACAAACGATTATTCA GAAGAACAATTACCAACATATCATAAATACATTGAAAATTTCAAAACAAGAAAAATTATT CATCCAAGTATAAGAATAACAGATCATGATAAAAAATTTATGAAATGTAAAGAAAGTTAT AATAAATTATATTCACATTTAACAGAGACTGAATTATTTGAAAATTTTTCATATGTTGGT AGACAAAGAAAAGGTATATTATCTCCAAAATATTATTTACCAAAATATATTGAAAGGCCA AATTATCACAAAACAGGTACGCCTATTTATGTAAATTATGAAAATAATTCAAAATCGAAG GAATGTATATCAATGAGAAATAGTAATAATGAAACGGAGAATGGTCACAAAACATATTCC ACTACAAATAAATATGAATATGATAATGTAAAAACTGATTATGATATTGAAATGATTTCA AGAAATTGCAAATTTGCTAGAGAACTAATGGATGATATATCATATATAATATGTGAAGGT ATAACAACAAATGATATAGATATATATATATTAAATAAATGTGTGAATAATGGATTTTAT CCTTCTCCATTAAATTATCATTTATTTCCTAAAAGTTCATGTATATCAATAAATGAAATA TTATGTCATGGTATACCAGATAATAATGTTTTATATGAAAATGATGTTGTAAAGGTGGAT ATAAGTGTGTATAAAGATGGATACCATGCTGATATGTGTGAAAGTTTTATTGTTCAAAAA ATTTCAAAAGAAGAAAAAAAAAAACGGAAAAAAAATTATGACTATATATATTTAAATGAT AAACTTCGAACTAAACATACAAAATATATTCTAAAATATAATTTCGACTTAACAACAAAT AAAATAGTTAAAAAGGGAAAATATCCATCTGTTAGAAAAGTTAGATATAATCCACCAAAT TCGAAAGAACATGAAAATGAATACATAGAAGAATATGATGATAATACTAACTCTGTTTTG GGGGAAAGTCCGTACGCTCATAGCTATTATACACATAATGGTGGCCCAAATAATGTTTCT GAAAATTATGAAGACGAACTTGAAAATTTTCATCGCAGATATGATGAAGATTTTATTTTT AATCCAAAAAAAGGAGAAGTATATAACAATCTTCAACAGTATATATATCAAAAGGGAATG GAAAAGGATAAAAATAGAAAAGAAACGAATAGAAAATTTGAATTTTTTGATACAAGTAAT CAAGGTATAGCAAATATGAAAAAATTTATGTTTGAAAAAAATAGAGATTTAATTAAAACT GCTTATGATTGTACTATGGAAGCTATAAGTATATGTAAGCCGGGTGTTCCTTTTAAAAAT ATAGCAAAAGTTATGGATGATTATTTGAAAAAAAAAAATAATTCATATCAATATTATTCT ATTGTCCCCAATTTATGTGGGCATAATATTGGGAAAAACTTTCATGAGGAGCCTTTTATT ATACATACATTAAATGACGATGATAGAAAAATGTGTGAGAACTTAGTTTTTACAATCGAG CCAATTATAACGGAGCGTTCTTGTGATTTTATTACTTGGCCCGATAACTGGACATTATCA AATTCAAGGTATTATTATTCTGCTCAGTTTGAGCACACCATACTTATCACAAAAAATGGG GCCAAAATTCTTACACAAAAAACAGACACATCTCCCAAGTATATATGGGAAGACGAGGGA AATTAG
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  • Fasta :-

    MNVHIFLLLLFCGTFLCKKNSNNSNFRIIHQNGTRGNRKRNVKCVREKKHYNYIHPNEIS KNKNDIRYHHYNFLITTCPQKKKLLAKKEKSKRQYNLNSSGEGFSNTVHTNVKKNTNDYS EEQLPTYHKYIENFKTRKIIHPSIRITDHDKKFMKCKESYNKLYSHLTETELFENFSYVG RQRKGILSPKYYLPKYIERPNYHKTGTPIYVNYENNSKSKECISMRNSNNETENGHKTYS TTNKYEYDNVKTDYDIEMISRNCKFARELMDDISYIICEGITTNDIDIYILNKCVNNGFY PSPLNYHLFPKSSCISINEILCHGIPDNNVLYENDVVKVDISVYKDGYHADMCESFIVQK ISKEEKKKRKKNYDYIYLNDKLRTKHTKYILKYNFDLTTNKIVKKGKYPSVRKVRYNPPN SKEHENEYIEEYDDNTNSVLGESPYAHSYYTHNGGPNNVSENYEDELENFHRRYDEDFIF NPKKGEVYNNLQQYIYQKGMEKDKNRKETNRKFEFFDTSNQGIANMKKFMFEKNRDLIKT AYDCTMEAISICKPGVPFKNIAKVMDDYLKKKNNSYQYYSIVPNLCGHNIGKNFHEEPFI IHTLNDDDRKMCENLVFTIEPIITERSCDFITWPDNWTLSNSRYYYSAQFEHTILITKNG AKILTQKTDTSPKYIWEDEGN

  • title: active site
  • coordinates: H323,D340,D351,H588,E620,E651
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
PCHAS_1226800228 SSMRNSNNET0.996unspPCHAS_1226800362 SVQKISKEEK0.996unsp

PCHAS_122680      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India