PCHAS_1227100 | proteasome subunit beta type-4, putative

_IDPredictionOTHERSPmTPCS_Position
PCHAS_1227100OTHER0.9856430.0030210.011336
No Results

  • Fasta :-

    >PCHAS_1227100 MTLGPVVTGTSVIALKYRNGIMIAADKKASYGSYAKFQNVQRIFKISNKTVMSFSGELAD AQYLHELLTRVNVNDVVEKKSKYDLHDTKYYHSYVSRLFYNRKNKLDPLFNNIIIAGLNS QEYDDNDKDILLYSEKQNNEEYKDIDKKDLYIGFVDMHGTQFCEDYITTGYARYFALTLL RNHYRDNMTEDEARSLLNECLRILYFRDTTASNKIQIVKVTSKGVEYEEPYILNCDLNSR DYIYPSTMLPATGCMW
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_1227100.fa Sequence name : PCHAS_1227100 Sequence length : 256 VALUES OF COMPUTED PARAMETERS Coef20 : 3.936 CoefTot : -1.711 ChDiff : -2 ZoneTo : 56 KR : 8 DE : 1 CleavSite : 52 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.059 1.053 0.053 0.451 MesoH : -0.978 0.033 -0.518 0.095 MuHd_075 : 29.915 15.761 8.244 6.411 MuHd_095 : 36.714 24.082 10.832 8.559 MuHd_100 : 43.406 28.375 12.748 10.262 MuHd_105 : 45.919 27.899 13.072 10.389 Hmax_075 : 5.100 5.300 -0.561 3.140 Hmax_095 : 10.588 11.725 0.911 4.252 Hmax_100 : 20.000 20.500 3.575 7.020 Hmax_105 : 18.600 17.325 3.056 6.099 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.2038 0.7962 DFMC : 0.1451 0.8549 This protein is probably imported in mitochondria. f(Ser) = 0.1071 f(Arg) = 0.0357 CMi = 0.89286 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 256 PCHAS_1227100 MTLGPVVTGTSVIALKYRNGIMIAADKKASYGSYAKFQNVQRIFKISNKTVMSFSGELADAQYLHELLTRVNVNDVVEKK 80 SKYDLHDTKYYHSYVSRLFYNRKNKLDPLFNNIIIAGLNSQEYDDNDKDILLYSEKQNNEEYKDIDKKDLYIGFVDMHGT 160 QFCEDYITTGYARYFALTLLRNHYRDNMTEDEARSLLNECLRILYFRDTTASNKIQIVKVTSKGVEYEEPYILNCDLNSR 240 DYIYPSTMLPATGCMW 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................ 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_1227100 16 TSVIALK|YR 0.069 . PCHAS_1227100 18 VIALKYR|NG 0.088 . PCHAS_1227100 27 IMIAADK|KA 0.065 . PCHAS_1227100 28 MIAADKK|AS 0.106 . PCHAS_1227100 36 SYGSYAK|FQ 0.064 . PCHAS_1227100 42 KFQNVQR|IF 0.098 . PCHAS_1227100 45 NVQRIFK|IS 0.123 . PCHAS_1227100 49 IFKISNK|TV 0.067 . PCHAS_1227100 70 LHELLTR|VN 0.068 . PCHAS_1227100 79 VNDVVEK|KS 0.062 . PCHAS_1227100 80 NDVVEKK|SK 0.163 . PCHAS_1227100 82 VVEKKSK|YD 0.061 . PCHAS_1227100 89 YDLHDTK|YY 0.065 . PCHAS_1227100 97 YHSYVSR|LF 0.086 . PCHAS_1227100 102 SRLFYNR|KN 0.068 . PCHAS_1227100 103 RLFYNRK|NK 0.075 . PCHAS_1227100 105 FYNRKNK|LD 0.095 . PCHAS_1227100 128 EYDDNDK|DI 0.055 . PCHAS_1227100 136 ILLYSEK|QN 0.063 . PCHAS_1227100 143 QNNEEYK|DI 0.122 . PCHAS_1227100 147 EYKDIDK|KD 0.053 . PCHAS_1227100 148 YKDIDKK|DL 0.162 . PCHAS_1227100 173 ITTGYAR|YF 0.074 . PCHAS_1227100 181 FALTLLR|NH 0.069 . PCHAS_1227100 185 LLRNHYR|DN 0.144 . PCHAS_1227100 194 MTEDEAR|SL 0.106 . PCHAS_1227100 202 LLNECLR|IL 0.085 . PCHAS_1227100 207 LRILYFR|DT 0.153 . PCHAS_1227100 214 DTTASNK|IQ 0.058 . PCHAS_1227100 219 NKIQIVK|VT 0.077 . PCHAS_1227100 223 IVKVTSK|GV 0.105 . PCHAS_1227100 240 NCDLNSR|DY 0.075 . ____________________________^_________________

  • Fasta :-

    >PCHAS_1227100 ATGACATTAGGCCCAGTAGTTACCGGAACATCAGTAATAGCGCTGAAATACAGAAATGGA ATAATGATTGCAGCTGACAAAAAAGCTAGCTATGGAAGCTATGCAAAATTCCAAAATGTG CAAAGGATTTTCAAGATAAGCAACAAAACAGTAATGAGCTTTAGTGGGGAACTAGCCGAT GCTCAATATTTACATGAATTATTAACACGGGTTAATGTAAATGATGTAGTAGAAAAAAAA AGCAAATATGACTTACACGATACCAAATATTATCATTCATATGTAAGTAGACTATTTTAT AATAGAAAAAATAAGCTTGACCCTTTATTTAATAATATAATAATAGCTGGCTTAAATTCA CAAGAATATGATGATAATGATAAAGATATATTATTATATTCAGAAAAACAGAATAATGAA GAATATAAAGACATTGATAAAAAGGATTTATATATTGGATTTGTCGATATGCATGGCACT CAATTCTGTGAGGATTATATAACAACCGGCTATGCTCGATACTTTGCCCTTACATTATTA CGAAACCATTATAGAGATAATATGACTGAAGATGAAGCTCGTTCATTATTAAATGAATGT TTAAGAATATTATATTTTAGAGACACAACAGCTTCAAATAAAATACAAATAGTTAAAGTA ACTAGTAAAGGTGTTGAATATGAAGAACCATATATACTTAATTGTGATTTAAATTCTAGG GATTATATTTATCCATCTACAATGCTTCCCGCAACTGGTTGTATGTGGTAG
  • Download Fasta

  • Fasta :-

    MTLGPVVTGTSVIALKYRNGIMIAADKKASYGSYAKFQNVQRIFKISNKTVMSFSGELAD AQYLHELLTRVNVNDVVEKKSKYDLHDTKYYHSYVSRLFYNRKNKLDPLFNNIIIAGLNS QEYDDNDKDILLYSEKQNNEEYKDIDKKDLYIGFVDMHGTQFCEDYITTGYARYFALTLL RNHYRDNMTEDEARSLLNECLRILYFRDTTASNKIQIVKVTSKGVEYEEPYILNCDLNSR DYIYPSTMLPATGCMW

  • title: active site
  • coordinates: T10,D26,K28,R42,Y171,D208,A211,S212
No Results
No Results
IDSitePeptideScoreMethod
PCHAS_122710081 SVEKKSKYDL0.994unsp

PCHAS_122710      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India