PCHAS_1233700 | proteasome subunit beta type-1, putative

_IDPredictionOTHERSPmTPCS_Position
PCHAS_1233700OTHER0.9998880.0000680.000044
No Results

  • Fasta :-

    >PCHAS_1233700 MEILQLNNNLVEKKKAEENEAPIEHARPSKRWNPYVDNGGTVIGLTGKDYVILAGDTRLS LSYSIYTRNCPKISKITDKCIIGSSGMQSDIKTLHSLLQKKIQLFYLEHSHYPSVHVIAK LLCVTLYSRRFFPYYTFNILAGIDENGKGVLYSYDAIGSYYQSTHACTGSGSSLILPILD NRVEQKNQLIKNMDFNLGDDINFVKDAMTSATERDIYTGDQAEIYIIDNLGINTTLLDLK KD
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_1233700.fa Sequence name : PCHAS_1233700 Sequence length : 242 VALUES OF COMPUTED PARAMETERS Coef20 : 3.032 CoefTot : 0.000 ChDiff : -2 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.282 1.129 0.172 0.469 MesoH : -0.166 0.305 -0.238 0.255 MuHd_075 : 27.817 16.629 7.507 4.430 MuHd_095 : 14.648 11.297 4.696 2.625 MuHd_100 : 6.374 10.157 2.610 2.273 MuHd_105 : 15.380 14.836 5.657 3.726 Hmax_075 : -1.517 7.350 -3.158 1.855 Hmax_095 : -11.400 1.663 -5.679 0.822 Hmax_100 : -10.500 5.400 -4.488 1.680 Hmax_105 : -7.817 7.583 -3.446 2.310 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9458 0.0542 DFMC : 0.9315 0.0685
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 242 PCHAS_1233700 MEILQLNNNLVEKKKAEENEAPIEHARPSKRWNPYVDNGGTVIGLTGKDYVILAGDTRLSLSYSIYTRNCPKISKITDKC 80 IIGSSGMQSDIKTLHSLLQKKIQLFYLEHSHYPSVHVIAKLLCVTLYSRRFFPYYTFNILAGIDENGKGVLYSYDAIGSY 160 YQSTHACTGSGSSLILPILDNRVEQKNQLIKNMDFNLGDDINFVKDAMTSATERDIYTGDQAEIYIIDNLGINTTLLDLK 240 KD 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_1233700 13 NNNLVEK|KK 0.065 . PCHAS_1233700 14 NNLVEKK|KA 0.128 . PCHAS_1233700 15 NLVEKKK|AE 0.113 . PCHAS_1233700 27 APIEHAR|PS 0.101 . PCHAS_1233700 30 EHARPSK|RW 0.138 . PCHAS_1233700 31 HARPSKR|WN 0.223 . PCHAS_1233700 48 VIGLTGK|DY 0.062 . PCHAS_1233700 58 ILAGDTR|LS 0.066 . PCHAS_1233700 68 SYSIYTR|NC 0.086 . PCHAS_1233700 72 YTRNCPK|IS 0.061 . PCHAS_1233700 75 NCPKISK|IT 0.065 . PCHAS_1233700 79 ISKITDK|CI 0.081 . PCHAS_1233700 92 GMQSDIK|TL 0.064 . PCHAS_1233700 100 LHSLLQK|KI 0.061 . PCHAS_1233700 101 HSLLQKK|IQ 0.090 . PCHAS_1233700 120 SVHVIAK|LL 0.074 . PCHAS_1233700 129 CVTLYSR|RF 0.062 . PCHAS_1233700 130 VTLYSRR|FF 0.106 . PCHAS_1233700 148 GIDENGK|GV 0.065 . PCHAS_1233700 182 LPILDNR|VE 0.071 . PCHAS_1233700 186 DNRVEQK|NQ 0.066 . PCHAS_1233700 191 QKNQLIK|NM 0.068 . PCHAS_1233700 205 DDINFVK|DA 0.082 . PCHAS_1233700 214 MTSATER|DI 0.176 . PCHAS_1233700 240 TTLLDLK|KD 0.058 . PCHAS_1233700 241 TLLDLKK|D- 0.114 . ____________________________^_________________

  • Fasta :-

    >PCHAS_1233700 ATGGAAATTTTACAATTAAATAATAATTTAGTTGAAAAAAAAAAAGCAGAAGAAAATGAA GCCCCAATAGAGCATGCTCGACCTTCTAAAAGGTGGAATCCATATGTTGACAATGGGGGA ACTGTTATTGGCTTAACAGGAAAGGATTATGTAATTTTGGCTGGAGATACTCGTTTGTCA TTGTCTTATTCCATATACACAAGAAACTGCCCCAAGATATCCAAAATAACTGATAAGTGT ATTATTGGGTCATCTGGAATGCAATCAGATATAAAAACACTGCACTCCCTATTACAGAAA AAAATTCAATTATTTTATTTAGAACACTCACATTATCCTAGTGTTCATGTGATTGCCAAA TTATTATGTGTCACATTATATAGCCGACGATTTTTCCCTTACTATACTTTTAATATATTA GCTGGGATAGATGAAAATGGAAAAGGGGTATTGTATAGTTATGATGCTATCGGTTCATAT TATCAATCAACACATGCATGTACAGGTAGTGGTTCCTCTCTTATATTGCCCATACTAGAT AATAGGGTTGAACAAAAAAATCAATTAATTAAAAATATGGATTTTAATTTAGGAGATGAT ATTAATTTTGTTAAAGATGCTATGACATCAGCAACAGAAAGAGATATATATACAGGAGAT CAAGCAGAAATTTATATTATTGATAATTTAGGAATAAATACTACATTGCTAGACTTAAAA AAGGATTAG
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  • Fasta :-

    MEILQLNNNLVEKKKAEENEAPIEHARPSKRWNPYVDNGGTVIGLTGKDYVILAGDTRLS LSYSIYTRNCPKISKITDKCIIGSSGMQSDIKTLHSLLQKKIQLFYLEHSHYPSVHVIAK LLCVTLYSRRFFPYYTFNILAGIDENGKGVLYSYDAIGSYYQSTHACTGSGSSLILPILD NRVEQKNQLIKNMDFNLGDDINFVKDAMTSATERDIYTGDQAEIYIIDNLGINTTLLDLK KD

  • title: active site
  • coordinates: G40,D56,R58,K72,S170,D215,T218,G219
No Results
No Results
IDSitePeptideScoreMethod
PCHAS_123370029 SHARPSKRWN0.996unsp

PCHAS_123370      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India