PCHAS_1242500 | methionine aminopeptidase 1a, putative

_IDPredictionOTHERSPmTPCS_Position
PCHAS_1242500mTP0.2878600.0000450.712095CS pos: 27-28. KYN-FH. Pr: 0.2808
No Results

  • Fasta :-

    >PCHAS_1242500 MYKLRRMSYLYKNWTTRFPHISKQKYNFHTYVLTPKLNKIRVSETTLFKPTLEDGKYKVV PSKKIPTHIKSPSYAKTGVVEPSNNIYEIKDEDSIIKMKKAAKIAANCLKLCLESSKEGI TTEEIDNLAFDFYIKNNAYPAGINFHGFPKTVCASPNEVVCHGIPNLRKLKNRDIITYDC TVYFDGVFGDCAGTTGIGDISEKHKKLIEVSKECLYKAISICRDGQKFSEIGRVITEHAH KNGFNVIKDFCGHFIGTNMHMYPLIEHHYPNSHEENEYMKKGQIFTIEPILSEGSINIHT WKDQWTVCTNDNSFCSQWEHTILVTENSAEILTECE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_1242500.fa Sequence name : PCHAS_1242500 Sequence length : 336 VALUES OF COMPUTED PARAMETERS Coef20 : 4.252 CoefTot : -1.640 ChDiff : 3 ZoneTo : 43 KR : 10 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.500 0.747 0.093 0.451 MesoH : -0.901 0.039 -0.399 0.160 MuHd_075 : 19.686 18.354 5.907 5.246 MuHd_095 : 40.353 21.688 9.476 8.198 MuHd_100 : 41.373 24.612 10.208 9.432 MuHd_105 : 38.275 22.583 10.483 8.219 Hmax_075 : 4.083 17.850 -0.530 2.530 Hmax_095 : 12.100 10.000 0.147 4.080 Hmax_100 : 17.000 14.600 1.519 6.510 Hmax_105 : 14.000 8.838 0.806 3.509 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0238 0.9762 DFMC : 0.0430 0.9570 This protein is probably imported in mitochondria. f(Ser) = 0.0698 f(Arg) = 0.0930 CMi = 0.34843 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 336 PCHAS_1242500 MYKLRRMSYLYKNWTTRFPHISKQKYNFHTYVLTPKLNKIRVSETTLFKPTLEDGKYKVVPSKKIPTHIKSPSYAKTGVV 80 EPSNNIYEIKDEDSIIKMKKAAKIAANCLKLCLESSKEGITTEEIDNLAFDFYIKNNAYPAGINFHGFPKTVCASPNEVV 160 CHGIPNLRKLKNRDIITYDCTVYFDGVFGDCAGTTGIGDISEKHKKLIEVSKECLYKAISICRDGQKFSEIGRVITEHAH 240 KNGFNVIKDFCGHFIGTNMHMYPLIEHHYPNSHEENEYMKKGQIFTIEPILSEGSINIHTWKDQWTVCTNDNSFCSQWEH 320 TILVTENSAEILTECE 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................ 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_1242500 3 ----MYK|LR 0.057 . PCHAS_1242500 5 --MYKLR|RM 0.086 . PCHAS_1242500 6 -MYKLRR|MS 0.118 . PCHAS_1242500 12 RMSYLYK|NW 0.082 . PCHAS_1242500 17 YKNWTTR|FP 0.118 . PCHAS_1242500 23 RFPHISK|QK 0.058 . PCHAS_1242500 25 PHISKQK|YN 0.067 . PCHAS_1242500 36 TYVLTPK|LN 0.059 . PCHAS_1242500 39 LTPKLNK|IR 0.053 . PCHAS_1242500 41 PKLNKIR|VS 0.092 . PCHAS_1242500 49 SETTLFK|PT 0.058 . PCHAS_1242500 56 PTLEDGK|YK 0.053 . PCHAS_1242500 58 LEDGKYK|VV 0.068 . PCHAS_1242500 63 YKVVPSK|KI 0.073 . PCHAS_1242500 64 KVVPSKK|IP 0.087 . PCHAS_1242500 70 KIPTHIK|SP 0.093 . PCHAS_1242500 76 KSPSYAK|TG 0.057 . PCHAS_1242500 90 NNIYEIK|DE 0.089 . PCHAS_1242500 97 DEDSIIK|MK 0.058 . PCHAS_1242500 99 DSIIKMK|KA 0.072 . PCHAS_1242500 100 SIIKMKK|AA 0.144 . PCHAS_1242500 103 KMKKAAK|IA 0.073 . PCHAS_1242500 110 IAANCLK|LC 0.059 . PCHAS_1242500 117 LCLESSK|EG 0.060 . PCHAS_1242500 135 AFDFYIK|NN 0.051 . PCHAS_1242500 150 NFHGFPK|TV 0.098 . PCHAS_1242500 168 HGIPNLR|KL 0.067 . PCHAS_1242500 169 GIPNLRK|LK 0.072 . PCHAS_1242500 171 PNLRKLK|NR 0.104 . PCHAS_1242500 173 LRKLKNR|DI 0.218 . PCHAS_1242500 203 IGDISEK|HK 0.063 . PCHAS_1242500 205 DISEKHK|KL 0.076 . PCHAS_1242500 206 ISEKHKK|LI 0.133 . PCHAS_1242500 212 KLIEVSK|EC 0.061 . PCHAS_1242500 217 SKECLYK|AI 0.093 . PCHAS_1242500 223 KAISICR|DG 0.082 . PCHAS_1242500 227 ICRDGQK|FS 0.079 . PCHAS_1242500 233 KFSEIGR|VI 0.091 . PCHAS_1242500 241 ITEHAHK|NG 0.068 . PCHAS_1242500 248 NGFNVIK|DF 0.084 . PCHAS_1242500 280 EENEYMK|KG 0.059 . PCHAS_1242500 281 ENEYMKK|GQ 0.086 . PCHAS_1242500 302 INIHTWK|DQ 0.078 . ____________________________^_________________

  • Fasta :-

    >PCHAS_1242500 ATGTATAAATTAAGAAGAATGTCATATTTATATAAAAATTGGACAACTCGGTTTCCCCAT ATATCAAAACAAAAATATAATTTTCATACATATGTATTAACACCAAAATTAAATAAAATT AGAGTGTCTGAAACCACTTTATTTAAACCTACCTTAGAAGATGGGAAATATAAAGTTGTA CCTTCTAAAAAAATTCCAACACATATAAAATCACCAAGCTATGCTAAAACAGGAGTTGTA GAACCCTCTAATAATATTTACGAAATTAAAGATGAAGATAGTATTATTAAAATGAAAAAG GCTGCAAAAATAGCAGCGAATTGTTTAAAATTATGTTTAGAAAGTTCAAAAGAAGGTATA ACAACAGAAGAAATTGACAATTTAGCATTTGATTTTTATATAAAAAACAATGCTTATCCT GCTGGAATTAATTTTCATGGCTTTCCTAAAACAGTATGTGCATCACCAAACGAAGTGGTT TGTCATGGGATACCAAATTTAAGGAAATTAAAAAACAGGGATATAATAACTTATGATTGT ACAGTTTATTTTGATGGTGTATTTGGTGATTGTGCTGGAACAACAGGGATAGGTGATATT TCAGAAAAACACAAAAAATTAATCGAAGTGAGTAAAGAGTGTCTTTATAAAGCTATTTCA ATATGTAGGGATGGTCAGAAATTTTCAGAAATTGGAAGAGTAATTACAGAACATGCTCAT AAAAATGGATTTAATGTAATTAAAGATTTTTGTGGTCATTTTATTGGAACAAATATGCAT ATGTACCCATTAATTGAACATCATTATCCTAATAGTCATGAAGAAAATGAATATATGAAA AAAGGCCAAATATTTACTATAGAGCCTATATTATCTGAAGGAAGTATAAACATTCATACA TGGAAAGATCAGTGGACTGTTTGTACTAATGATAATTCTTTTTGCTCACAATGGGAACAT ACTATTTTAGTAACAGAGAATTCCGCTGAAATATTAACTGAATGTGAATAG
  • Download Fasta

  • Fasta :-

    MYKLRRMSYLYKNWTTRFPHISKQKYNFHTYVLTPKLNKIRVSETTLFKPTLEDGKYKVV PSKKIPTHIKSPSYAKTGVVEPSNNIYEIKDEDSIIKMKKAAKIAANCLKLCLESSKEGI TTEEIDNLAFDFYIKNNAYPAGINFHGFPKTVCASPNEVVCHGIPNLRKLKNRDIITYDC TVYFDGVFGDCAGTTGIGDISEKHKKLIEVSKECLYKAISICRDGQKFSEIGRVITEHAH KNGFNVIKDFCGHFIGTNMHMYPLIEHHYPNSHEENEYMKKGQIFTIEPILSEGSINIHT WKDQWTVCTNDNSFCSQWEHTILVTENSAEILTECE

  • title: active site
  • coordinates: H162,D179,D190,H253,E288,E319
No Results
No Results
IDSitePeptideScoreMethod
PCHAS_1242500115 SLCLESSKEG0.991unsp

PCHAS_124250      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India