PCHAS_1324000 | signal peptide peptidase, putative

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004190      

  • Computed_GO_Functions:  aspartic-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PCHAS_1324000OTHER0.9998130.0000220.000165
No Results

  • Fasta :-

    >PCHAS_1324000 MNLLKLIGKNKKMKNPDKRNSIIYYSCYAIIVLIIILSRFIVIPLVAQMSLYTLITIYIG SHESIRQLEADDKSQKTDHITTYDAIMFPIIGSAALLTLYFAYKFLDPYYVNMLLTVYLT MAGVFSLQGVFSTLLEPFFPKLFKKDEYVKTINAPKFISKDPIVFNTNKGEILSLIVCFI IGARWLFYKDFITHNILAISFCFQALSLVILSNFVIGFILLSGLFVYDIFWVFGNDVMVT VAKSFEAPVKLLFPVSLDPLHYSMLGLGDIIIPGILMALCLRFDYYLHRNKIHKGNTKKM FNDISIHEPFKKYYFYTITAFYQAGLLLTYFMLFYFQHAQPALLYLVPACIIAIVGCALC KKEFKIMIKYQEITDKGSNTDEGKKKILEKEETLKSQESIMSVAKKRVNAK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_1324000.fa Sequence name : PCHAS_1324000 Sequence length : 411 VALUES OF COMPUTED PARAMETERS Coef20 : 3.388 CoefTot : -1.549 ChDiff : 14 ZoneTo : 62 KR : 8 DE : 1 CleavSite : 49 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.071 3.024 0.692 0.885 MesoH : 1.009 1.574 0.073 0.608 MuHd_075 : 31.687 27.266 9.975 8.156 MuHd_095 : 18.917 14.748 5.374 4.113 MuHd_100 : 21.436 15.885 6.943 4.934 MuHd_105 : 30.569 21.306 9.268 7.502 Hmax_075 : -6.800 22.313 -3.180 7.070 Hmax_095 : 16.800 17.238 0.730 7.157 Hmax_100 : 19.200 24.800 -2.215 1.060 Hmax_105 : -2.217 8.167 -2.261 2.987 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7898 0.2102 DFMC : 0.4903 0.5097 This protein is probably imported in mitochondria. f(Ser) = 0.0806 f(Arg) = 0.0323 CMi = 0.70028 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 411 PCHAS_1324000 MNLLKLIGKNKKMKNPDKRNSIIYYSCYAIIVLIIILSRFIVIPLVAQMSLYTLITIYIGSHESIRQLEADDKSQKTDHI 80 TTYDAIMFPIIGSAALLTLYFAYKFLDPYYVNMLLTVYLTMAGVFSLQGVFSTLLEPFFPKLFKKDEYVKTINAPKFISK 160 DPIVFNTNKGEILSLIVCFIIGARWLFYKDFITHNILAISFCFQALSLVILSNFVIGFILLSGLFVYDIFWVFGNDVMVT 240 VAKSFEAPVKLLFPVSLDPLHYSMLGLGDIIIPGILMALCLRFDYYLHRNKIHKGNTKKMFNDISIHEPFKKYYFYTITA 320 FYQAGLLLTYFMLFYFQHAQPALLYLVPACIIAIVGCALCKKEFKIMIKYQEITDKGSNTDEGKKKILEKEETLKSQESI 400 MSVAKKRVNAK 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ........... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_1324000 5 --MNLLK|LI 0.073 . PCHAS_1324000 9 LLKLIGK|NK 0.061 . PCHAS_1324000 11 KLIGKNK|KM 0.057 . PCHAS_1324000 12 LIGKNKK|MK 0.096 . PCHAS_1324000 14 GKNKKMK|NP 0.081 . PCHAS_1324000 18 KMKNPDK|RN 0.071 . PCHAS_1324000 19 MKNPDKR|NS 0.235 . PCHAS_1324000 39 LIIILSR|FI 0.084 . PCHAS_1324000 66 GSHESIR|QL 0.120 . PCHAS_1324000 73 QLEADDK|SQ 0.069 . PCHAS_1324000 76 ADDKSQK|TD 0.059 . PCHAS_1324000 104 TLYFAYK|FL 0.086 . PCHAS_1324000 141 LEPFFPK|LF 0.062 . PCHAS_1324000 144 FFPKLFK|KD 0.060 . PCHAS_1324000 145 FPKLFKK|DE 0.125 . PCHAS_1324000 150 KKDEYVK|TI 0.059 . PCHAS_1324000 156 KTINAPK|FI 0.077 . PCHAS_1324000 160 APKFISK|DP 0.070 . PCHAS_1324000 169 IVFNTNK|GE 0.061 . PCHAS_1324000 184 CFIIGAR|WL 0.081 . PCHAS_1324000 189 ARWLFYK|DF 0.085 . PCHAS_1324000 243 VMVTVAK|SF 0.090 . PCHAS_1324000 250 SFEAPVK|LL 0.067 . PCHAS_1324000 282 LMALCLR|FD 0.074 . PCHAS_1324000 289 FDYYLHR|NK 0.093 . PCHAS_1324000 291 YYLHRNK|IH 0.053 . PCHAS_1324000 294 HRNKIHK|GN 0.101 . PCHAS_1324000 298 IHKGNTK|KM 0.064 . PCHAS_1324000 299 HKGNTKK|MF 0.122 . PCHAS_1324000 311 SIHEPFK|KY 0.064 . PCHAS_1324000 312 IHEPFKK|YY 0.128 . PCHAS_1324000 361 VGCALCK|KE 0.060 . PCHAS_1324000 362 GCALCKK|EF 0.093 . PCHAS_1324000 365 LCKKEFK|IM 0.066 . PCHAS_1324000 369 EFKIMIK|YQ 0.067 . PCHAS_1324000 376 YQEITDK|GS 0.072 . PCHAS_1324000 384 SNTDEGK|KK 0.060 . PCHAS_1324000 385 NTDEGKK|KI 0.087 . PCHAS_1324000 386 TDEGKKK|IL 0.196 . PCHAS_1324000 390 KKKILEK|EE 0.058 . PCHAS_1324000 395 EKEETLK|SQ 0.078 . PCHAS_1324000 405 SIMSVAK|KR 0.061 . PCHAS_1324000 406 IMSVAKK|RV 0.234 . PCHAS_1324000 407 MSVAKKR|VN 0.214 . PCHAS_1324000 411 KKRVNAK|-- 0.081 . ____________________________^_________________

  • Fasta :-

    >PCHAS_1324000 ATGAATTTACTAAAGTTAATTGGAAAAAATAAAAAAATGAAGAATCCTGACAAGCGGAAT TCAATAATTTACTACTCCTGTTATGCAATTATAGTTTTAATTATAATTTTGTCGAGGTTT ATTGTGATACCTCTAGTGGCCCAAATGTCTTTATATACACTTATAACGATATATATTGGA AGCCATGAAAGCATAAGACAATTAGAGGCTGATGATAAAAGTCAAAAGACTGACCATATA ACGACATATGATGCAATAATGTTTCCAATTATTGGATCAGCTGCATTATTAACATTATAT TTTGCCTACAAGTTTTTAGATCCCTATTATGTAAATATGTTGCTAACCGTTTATTTAACA ATGGCAGGAGTATTTTCATTACAAGGTGTTTTTTCGACTCTTTTGGAACCCTTTTTTCCA AAATTGTTTAAAAAAGATGAATATGTTAAAACTATTAATGCTCCAAAGTTTATTTCAAAA GATCCAATTGTATTTAATACAAACAAAGGAGAAATTTTGAGTTTGATTGTTTGTTTCATA ATTGGTGCACGATGGTTATTTTACAAAGACTTTATTACACACAATATATTAGCAATTTCC TTTTGCTTCCAAGCATTATCATTGGTCATTTTAAGCAACTTCGTAATTGGATTCATATTA TTGTCTGGATTATTCGTGTATGATATATTTTGGGTCTTTGGAAATGACGTTATGGTTACC GTTGCAAAATCATTTGAAGCTCCTGTAAAATTGTTGTTTCCCGTGTCTTTAGATCCATTA CATTATAGCATGCTTGGTTTAGGAGATATAATTATTCCAGGAATTTTAATGGCTTTATGC TTACGTTTTGATTATTATTTACATAGAAATAAAATACATAAAGGAAACACTAAGAAAATG TTTAATGATATATCTATTCATGAACCTTTCAAGAAATATTATTTTTATACAATAACAGCA TTTTATCAAGCAGGTTTATTATTAACATATTTTATGCTCTTTTATTTTCAACATGCTCAA CCAGCTTTGTTATATTTAGTACCTGCTTGTATAATAGCCATAGTAGGATGCGCATTGTGC AAAAAAGAATTTAAAATAATGATTAAATATCAAGAAATTACAGATAAAGGCTCAAATACC GATGAAGGAAAGAAAAAGATCCTTGAAAAAGAAGAAACACTTAAAAGTCAAGAATCAATT ATGTCAGTTGCAAAAAAAAGAGTTAATGCTAAATAA
  • Download Fasta

  • Fasta :-

    MNLLKLIGKNKKMKNPDKRNSIIYYSCYAIIVLIIILSRFIVIPLVAQMSLYTLITIYIG SHESIRQLEADDKSQKTDHITTYDAIMFPIIGSAALLTLYFAYKFLDPYYVNMLLTVYLT MAGVFSLQGVFSTLLEPFFPKLFKKDEYVKTINAPKFISKDPIVFNTNKGEILSLIVCFI IGARWLFYKDFITHNILAISFCFQALSLVILSNFVIGFILLSGLFVYDIFWVFGNDVMVT VAKSFEAPVKLLFPVSLDPLHYSMLGLGDIIIPGILMALCLRFDYYLHRNKIHKGNTKKM FNDISIHEPFKKYYFYTITAFYQAGLLLTYFMLFYFQHAQPALLYLVPACIIAIVGCALC KKEFKIMIKYQEITDKGSNTDEGKKKILEKEETLKSQESIMSVAKKRVNAK

    No Results
    No Results
No Results
No Results
No Results

PCHAS_132400      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India