PCHAS_1327400 | ubiquitin carboxyl-terminal hydrolase isozyme L3, putative

_IDPredictionOTHERSPmTPCS_Position
PCHAS_1327400OTHER0.9999590.0000310.000010
No Results

  • Fasta :-

    >PCHAS_1327400 MTKRKIWIPIESNPDSLYLYSCKLGQQKLSFVDIYGFSSDLLDMIPKPVHAIIFLYPIKD DMDNNIGSSHINTTNGDSGIWFIKQTVPNSCGTIALLHMLANLRNTFPLDKDSVLDTFFT KVDQLKPEGRAMEFENNDIIEQLHHEFSGSDLNAGESIDVDTHFIAFLEINGMLVELDGR KNHPIIHGQTTSANFVYDAGKLIQDNFINKYQDCHSFSALAVVPTNVV
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_1327400.fa Sequence name : PCHAS_1327400 Sequence length : 228 VALUES OF COMPUTED PARAMETERS Coef20 : 3.692 CoefTot : -0.344 ChDiff : -12 ZoneTo : 10 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.912 1.153 0.000 0.540 MesoH : -0.413 0.228 -0.391 0.250 MuHd_075 : 20.211 10.297 3.727 4.000 MuHd_095 : 26.426 12.660 5.978 5.142 MuHd_100 : 24.125 11.177 5.593 4.222 MuHd_105 : 17.316 8.386 4.127 2.776 Hmax_075 : 4.725 3.063 -1.669 2.450 Hmax_095 : 3.762 4.375 -0.695 3.124 Hmax_100 : 5.800 6.200 -0.076 3.590 Hmax_105 : 0.583 5.367 -2.087 2.835 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7652 0.2348 DFMC : 0.7863 0.2137
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 228 PCHAS_1327400 MTKRKIWIPIESNPDSLYLYSCKLGQQKLSFVDIYGFSSDLLDMIPKPVHAIIFLYPIKDDMDNNIGSSHINTTNGDSGI 80 WFIKQTVPNSCGTIALLHMLANLRNTFPLDKDSVLDTFFTKVDQLKPEGRAMEFENNDIIEQLHHEFSGSDLNAGESIDV 160 DTHFIAFLEINGMLVELDGRKNHPIIHGQTTSANFVYDAGKLIQDNFINKYQDCHSFSALAVVPTNVV 240 ................................................................................ 80 ................................................................................ 160 .................................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_1327400 3 ----MTK|RK 0.060 . PCHAS_1327400 4 ---MTKR|KI 0.179 . PCHAS_1327400 5 --MTKRK|IW 0.129 . PCHAS_1327400 23 LYLYSCK|LG 0.063 . PCHAS_1327400 28 CKLGQQK|LS 0.060 . PCHAS_1327400 47 LLDMIPK|PV 0.085 . PCHAS_1327400 59 IFLYPIK|DD 0.067 . PCHAS_1327400 84 SGIWFIK|QT 0.066 . PCHAS_1327400 104 HMLANLR|NT 0.077 . PCHAS_1327400 111 NTFPLDK|DS 0.056 . PCHAS_1327400 121 LDTFFTK|VD 0.057 . PCHAS_1327400 126 TKVDQLK|PE 0.078 . PCHAS_1327400 130 QLKPEGR|AM 0.102 . PCHAS_1327400 180 LVELDGR|KN 0.087 . PCHAS_1327400 181 VELDGRK|NH 0.064 . PCHAS_1327400 201 FVYDAGK|LI 0.063 . PCHAS_1327400 210 QDNFINK|YQ 0.066 . ____________________________^_________________

  • Fasta :-

    >PCHAS_1327400 ATGACAAAAAGAAAAATATGGATACCAATAGAATCGAATCCCGATTCGTTGTATTTGTAC TCTTGTAAACTTGGACAACAAAAGTTGAGTTTTGTAGACATTTATGGTTTTAGCAGCGAT TTATTAGATATGATACCTAAACCTGTTCACGCAATAATATTCTTATATCCAATAAAGGAT GATATGGATAATAACATTGGGTCAAGTCACATAAATACAACAAATGGTGATAGCGGCATT TGGTTCATAAAACAAACCGTCCCCAATTCTTGCGGTACTATAGCACTTTTGCATATGCTT GCAAATTTGAGGAATACATTTCCATTAGATAAAGATTCTGTATTGGACACATTTTTTACT AAAGTTGACCAACTAAAACCGGAAGGACGCGCAATGGAATTTGAGAATAACGATATTATT GAACAATTGCACCATGAGTTTTCGGGAAGTGATTTAAATGCAGGAGAAAGTATTGATGTT GACACACATTTTATTGCGTTCTTAGAAATAAATGGAATGCTAGTCGAATTGGATGGAAGA AAAAATCACCCTATAATCCATGGCCAAACCACAAGTGCCAATTTTGTATACGATGCTGGA AAATTAATTCAAGATAACTTTATAAACAAGTATCAAGATTGCCACAGTTTTTCTGCCCTT GCAGTCGTACCAACTAATGTAGTGTAA
  • Download Fasta

  • Fasta :-

    MTKRKIWIPIESNPDSLYLYSCKLGQQKLSFVDIYGFSSDLLDMIPKPVHAIIFLYPIKD DMDNNIGSSHINTTNGDSGIWFIKQTVPNSCGTIALLHMLANLRNTFPLDKDSVLDTFFT KVDQLKPEGRAMEFENNDIIEQLHHEFSGSDLNAGESIDVDTHFIAFLEINGMLVELDGR KNHPIIHGQTTSANFVYDAGKLIQDNFINKYQDCHSFSALAVVPTNVV

  • title: catalytic site
  • coordinates: Q85,C91,H163,D178
No Results
No Results
IDSitePeptideScoreMethod
PCHAS_1327400113 SLDKDSVLDT0.994unsp

PCHAS_132740      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India