PCHAS_1336400 | derlin-1, putative

_IDPredictionOTHERSPmTPCS_Position
PCHAS_1336400OTHER0.9998470.0001190.000034
No Results

  • Fasta :-

    >PCHAS_1336400 MVQLGELLSNIPLITRVYLILSSILMVLCSLDIISPLSLYLNWNLVLNEHQYWRLITCFL YFGSFGLHFFWDIYVLIYYCSSLEDVTFRNNSADFLWMIIVSCFMLLMVSYIFGGIYFYS SCIINVITYVWSKNNSSTRLTIFFFTIKASYLPWVLTILSLIVDYNSNDNFFGILVGHIY FFFTSVFPLMPIAKNTQIFKTPYLLKWMLRQEEGHRTA
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_1336400.fa Sequence name : PCHAS_1336400 Sequence length : 218 VALUES OF COMPUTED PARAMETERS Coef20 : 4.161 CoefTot : -0.784 ChDiff : 0 ZoneTo : 71 KR : 2 DE : 3 CleavSite : 64 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.476 2.382 0.484 0.819 MesoH : 1.046 1.220 0.068 0.528 MuHd_075 : 25.669 22.278 7.636 5.888 MuHd_095 : 18.517 18.743 5.668 5.318 MuHd_100 : 24.309 21.341 7.089 6.927 MuHd_105 : 33.030 23.918 8.456 7.788 Hmax_075 : 7.000 13.400 -0.241 7.460 Hmax_095 : 14.087 27.037 1.704 7.341 Hmax_100 : 20.600 29.100 4.297 7.290 Hmax_105 : 17.300 29.983 3.659 7.677 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9792 0.0208 DFMC : 0.9637 0.0363
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 218 PCHAS_1336400 MVQLGELLSNIPLITRVYLILSSILMVLCSLDIISPLSLYLNWNLVLNEHQYWRLITCFLYFGSFGLHFFWDIYVLIYYC 80 SSLEDVTFRNNSADFLWMIIVSCFMLLMVSYIFGGIYFYSSCIINVITYVWSKNNSSTRLTIFFFTIKASYLPWVLTILS 160 LIVDYNSNDNFFGILVGHIYFFFTSVFPLMPIAKNTQIFKTPYLLKWMLRQEEGHRTA 240 ................................................................................ 80 ................................................................................ 160 .......................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_1336400 16 NIPLITR|VY 0.059 . PCHAS_1336400 54 NEHQYWR|LI 0.087 . PCHAS_1336400 89 LEDVTFR|NN 0.102 . PCHAS_1336400 133 ITYVWSK|NN 0.065 . PCHAS_1336400 139 KNNSSTR|LT 0.102 . PCHAS_1336400 148 IFFFTIK|AS 0.053 . PCHAS_1336400 194 PLMPIAK|NT 0.062 . PCHAS_1336400 200 KNTQIFK|TP 0.056 . PCHAS_1336400 206 KTPYLLK|WM 0.065 . PCHAS_1336400 210 LLKWMLR|QE 0.102 . PCHAS_1336400 216 RQEEGHR|TA 0.084 . ____________________________^_________________

  • Fasta :-

    >PCHAS_1336400 ATGGTCCAACTCGGTGAGCTATTAAGTAACATTCCGTTAATAACTCGAGTGTATCTTATT CTTTCTTCAATTTTGATGGTTTTATGTTCTCTTGATATAATATCACCATTAAGTTTGTAT TTGAATTGGAACTTAGTATTGAACGAACATCAGTATTGGAGATTAATTACCTGCTTTTTG TACTTTGGGTCTTTTGGACTACACTTTTTTTGGGATATCTATGTATTAATATATTATTGT AGTTCCCTTGAAGATGTGACATTTAGAAATAACTCAGCTGACTTTTTGTGGATGATAATA GTGTCATGCTTCATGCTATTGATGGTTTCATACATATTCGGAGGAATATACTTCTATAGC AGTTGTATTATAAACGTGATTACGTATGTGTGGAGCAAGAACAATTCTTCTACAAGGTTG ACGATATTCTTCTTTACGATAAAAGCTTCTTATCTTCCATGGGTTTTGACAATCTTATCT CTTATCGTGGATTACAATTCAAATGATAACTTTTTTGGAATATTAGTTGGGCACATTTAT TTCTTTTTTACTAGCGTTTTTCCCCTTATGCCCATCGCAAAAAACACGCAAATTTTTAAG ACTCCTTATCTCCTGAAATGGATGTTAAGACAAGAAGAAGGACATAGAACAGCATAG
  • Download Fasta

  • Fasta :-

    MVQLGELLSNIPLITRVYLILSSILMVLCSLDIISPLSLYLNWNLVLNEHQYWRLITCFL YFGSFGLHFFWDIYVLIYYCSSLEDVTFRNNSADFLWMIIVSCFMLLMVSYIFGGIYFYS SCIINVITYVWSKNNSSTRLTIFFFTIKASYLPWVLTILSLIVDYNSNDNFFGILVGHIY FFFTSVFPLMPIAKNTQIFKTPYLLKWMLRQEEGHRTA

    No Results
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PCHAS_133640      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India