PCHAS_1338700 | proteasome subunit beta type-2, putative

_IDPredictionOTHERSPmTPCS_Position
PCHAS_1338700OTHER0.9995190.0004340.000047
No Results

  • Fasta :-

    >PCHAS_1338700 MDTLIGLKGKDFIILGADTYSINSIIKLKNDDKTKFYDINGNKCLLLGGSIGDRIQFGEF IRKNVHLYQYQNSTSLYVKSFAYFTRKNLAYYLRRNPYEVNCLIAGYDDKDGYQLYWCDY LSNMDAINKGAHGYGAYLVNAILDKYYHENMDLEEALDIFKKCFEELKKRFLLTQINYEL RIMSNNKIETQYVNI
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_1338700.fa Sequence name : PCHAS_1338700 Sequence length : 195 VALUES OF COMPUTED PARAMETERS Coef20 : 3.380 CoefTot : 0.000 ChDiff : 1 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.371 1.165 -0.061 0.481 MesoH : -1.356 -0.134 -0.569 0.087 MuHd_075 : 7.790 7.878 2.728 1.488 MuHd_095 : 23.094 10.386 5.126 3.865 MuHd_100 : 13.832 5.060 3.444 2.420 MuHd_105 : 12.870 3.613 3.852 0.944 Hmax_075 : 5.367 15.633 1.625 5.693 Hmax_095 : 8.137 12.500 0.690 4.655 Hmax_100 : 8.000 12.500 0.546 4.700 Hmax_105 : 4.000 11.667 0.546 4.540 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9833 0.0167 DFMC : 0.9882 0.0118
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 195 PCHAS_1338700 MDTLIGLKGKDFIILGADTYSINSIIKLKNDDKTKFYDINGNKCLLLGGSIGDRIQFGEFIRKNVHLYQYQNSTSLYVKS 80 FAYFTRKNLAYYLRRNPYEVNCLIAGYDDKDGYQLYWCDYLSNMDAINKGAHGYGAYLVNAILDKYYHENMDLEEALDIF 160 KKCFEELKKRFLLTQINYELRIMSNNKIETQYVNI 240 ................................................................................ 80 ................................................................................ 160 ................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_1338700 8 DTLIGLK|GK 0.056 . PCHAS_1338700 10 LIGLKGK|DF 0.079 . PCHAS_1338700 27 SINSIIK|LK 0.062 . PCHAS_1338700 29 NSIIKLK|ND 0.062 . PCHAS_1338700 33 KLKNDDK|TK 0.060 . PCHAS_1338700 35 KNDDKTK|FY 0.078 . PCHAS_1338700 43 YDINGNK|CL 0.058 . PCHAS_1338700 54 GGSIGDR|IQ 0.084 . PCHAS_1338700 62 QFGEFIR|KN 0.072 . PCHAS_1338700 63 FGEFIRK|NV 0.099 . PCHAS_1338700 79 STSLYVK|SF 0.076 . PCHAS_1338700 86 SFAYFTR|KN 0.091 . PCHAS_1338700 87 FAYFTRK|NL 0.078 . PCHAS_1338700 94 NLAYYLR|RN 0.078 . PCHAS_1338700 95 LAYYLRR|NP 0.107 . PCHAS_1338700 110 IAGYDDK|DG 0.066 . PCHAS_1338700 129 NMDAINK|GA 0.071 . PCHAS_1338700 145 VNAILDK|YY 0.071 . PCHAS_1338700 161 EALDIFK|KC 0.057 . PCHAS_1338700 162 ALDIFKK|CF 0.098 . PCHAS_1338700 168 KCFEELK|KR 0.054 . PCHAS_1338700 169 CFEELKK|RF 0.065 . PCHAS_1338700 170 FEELKKR|FL 0.233 . PCHAS_1338700 181 QINYELR|IM 0.083 . PCHAS_1338700 187 RIMSNNK|IE 0.062 . ____________________________^_________________

  • Fasta :-

    >PCHAS_1338700 ATGGATACATTAATCGGGTTAAAGGGAAAGGATTTCATAATTTTAGGAGCAGATACTTAT AGCATCAATTCAATTATAAAATTAAAAAATGATGATAAAACAAAATTTTATGATATAAAT GGAAATAAATGTTTATTATTAGGAGGCTCAATTGGTGATAGAATACAGTTTGGAGAATTT ATTAGAAAGAATGTTCATTTATACCAATACCAAAATTCTACTTCTCTATATGTTAAATCT TTTGCTTATTTCACAAGAAAAAATCTAGCCTATTATTTGAGAAGAAATCCATATGAAGTA AATTGCTTGATAGCCGGATATGATGATAAGGATGGATATCAACTATACTGGTGTGATTAT TTAAGTAACATGGATGCTATAAATAAAGGTGCTCATGGATATGGAGCTTATTTAGTTAAT GCCATATTGGACAAATATTATCATGAAAACATGGATTTAGAGGAAGCATTAGATATTTTT AAGAAATGTTTTGAAGAACTAAAAAAAAGATTTCTTCTTACCCAAATTAATTACGAATTA AGAATAATGTCAAATAATAAAATAGAAACACAATACGTTAATATTTAA
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  • Fasta :-

    MDTLIGLKGKDFIILGADTYSINSIIKLKNDDKTKFYDINGNKCLLLGGSIGDRIQFGEF IRKNVHLYQYQNSTSLYVKSFAYFTRKNLAYYLRRNPYEVNCLIAGYDDKDGYQLYWCDY LSNMDAINKGAHGYGAYLVNAILDKYYHENMDLEEALDIFKKCFEELKKRFLLTQINYEL RIMSNNKIETQYVNI

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PCHAS_133870      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India