PCHAS_1343300 | plasmepsin V, putative

_IDPredictionOTHERSPmTPCS_Position
PCHAS_1343300SP0.0074540.9925150.000031CS pos: 24-25. ANS-ED. Pr: 0.6117
No Results

  • Fasta :-

    >PCHAS_1343300 MGFSKLYKFVTYFIIINILVQANSEDVLNKNSGKNEEIYKYKLYGDIDQYAYYFMDIDIG TPGQKISLIVDTGSSSLSFPCSECKDCGVHMENPFNLNNSSTSSVLYCNDNSNCPYHLKC VKGRCEYLQSYCEGSRINGFYFLDFVKLESYNNTNNGDIIFKKHMGCHMHEEGLFLQQHA TGVLGLSLTKPKGVPTFIDLLFKNSPKLNKVFSLCISEYGGEMIIGGYSKNYVIKDVSNN EKSDQIVHNKDEDINSVDKSMEINKNKSIVDDIVWEAITKKYYYYIKVEGFELFGTTFSH NNTSMEMLVDSGSTFTHLPDDLYNSLNFFFDLLCIHNMNNPIDIEKRLKITNETINKHIL YFDDFKSTLKNIISSENMCVKIADNVQCWRYLKHLPNIYIKLSNNTRLLWKPSSYLYKKE SFWCKGLEKQVNNKPILGLSFFKNKQIIFDLKNNKIGFVESNCPSNPINTRPRTFNEYNI KENYLYKQSYFSLYSLSIIIALTFILYIILYIKKIIYSYYNPLHGENTSSD
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_1343300.fa Sequence name : PCHAS_1343300 Sequence length : 531 VALUES OF COMPUTED PARAMETERS Coef20 : 4.303 CoefTot : -0.604 ChDiff : 1 ZoneTo : 24 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.271 2.776 0.530 0.959 MesoH : -0.508 0.190 -0.385 0.219 MuHd_075 : 24.005 24.727 8.662 5.754 MuHd_095 : 21.167 16.207 6.771 5.433 MuHd_100 : 16.368 11.680 4.987 4.275 MuHd_105 : 21.205 16.890 5.688 5.719 Hmax_075 : 20.883 29.167 5.402 8.517 Hmax_095 : 16.538 19.512 3.688 6.834 Hmax_100 : 14.300 15.000 2.752 5.700 Hmax_105 : 22.400 26.017 4.538 8.300 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8556 0.1444 DFMC : 0.9554 0.0446
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 531 PCHAS_1343300 MGFSKLYKFVTYFIIINILVQANSEDVLNKNSGKNEEIYKYKLYGDIDQYAYYFMDIDIGTPGQKISLIVDTGSSSLSFP 80 CSECKDCGVHMENPFNLNNSSTSSVLYCNDNSNCPYHLKCVKGRCEYLQSYCEGSRINGFYFLDFVKLESYNNTNNGDII 160 FKKHMGCHMHEEGLFLQQHATGVLGLSLTKPKGVPTFIDLLFKNSPKLNKVFSLCISEYGGEMIIGGYSKNYVIKDVSNN 240 EKSDQIVHNKDEDINSVDKSMEINKNKSIVDDIVWEAITKKYYYYIKVEGFELFGTTFSHNNTSMEMLVDSGSTFTHLPD 320 DLYNSLNFFFDLLCIHNMNNPIDIEKRLKITNETINKHILYFDDFKSTLKNIISSENMCVKIADNVQCWRYLKHLPNIYI 400 KLSNNTRLLWKPSSYLYKKESFWCKGLEKQVNNKPILGLSFFKNKQIIFDLKNNKIGFVESNCPSNPINTRPRTFNEYNI 480 KENYLYKQSYFSLYSLSIIIALTFILYIILYIKKIIYSYYNPLHGENTSSD 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_1343300 5 --MGFSK|LY 0.058 . PCHAS_1343300 8 GFSKLYK|FV 0.094 . PCHAS_1343300 30 SEDVLNK|NS 0.079 . PCHAS_1343300 34 LNKNSGK|NE 0.064 . PCHAS_1343300 40 KNEEIYK|YK 0.064 . PCHAS_1343300 42 EEIYKYK|LY 0.088 . PCHAS_1343300 65 IGTPGQK|IS 0.057 . PCHAS_1343300 85 FPCSECK|DC 0.082 . PCHAS_1343300 119 NCPYHLK|CV 0.065 . PCHAS_1343300 122 YHLKCVK|GR 0.062 . PCHAS_1343300 124 LKCVKGR|CE 0.100 . PCHAS_1343300 136 SYCEGSR|IN 0.081 . PCHAS_1343300 147 YFLDFVK|LE 0.054 . PCHAS_1343300 162 NGDIIFK|KH 0.059 . PCHAS_1343300 163 GDIIFKK|HM 0.152 . PCHAS_1343300 190 LGLSLTK|PK 0.056 . PCHAS_1343300 192 LSLTKPK|GV 0.086 . PCHAS_1343300 203 FIDLLFK|NS 0.055 . PCHAS_1343300 207 LFKNSPK|LN 0.057 . PCHAS_1343300 210 NSPKLNK|VF 0.060 . PCHAS_1343300 230 IIGGYSK|NY 0.059 . PCHAS_1343300 235 SKNYVIK|DV 0.192 . PCHAS_1343300 242 DVSNNEK|SD 0.081 . PCHAS_1343300 250 DQIVHNK|DE 0.071 . PCHAS_1343300 259 DINSVDK|SM 0.079 . PCHAS_1343300 265 KSMEINK|NK 0.071 . PCHAS_1343300 267 MEINKNK|SI 0.106 . PCHAS_1343300 280 VWEAITK|KY 0.059 . PCHAS_1343300 281 WEAITKK|YY 0.107 . PCHAS_1343300 287 KYYYYIK|VE 0.066 . PCHAS_1343300 346 NPIDIEK|RL 0.060 . PCHAS_1343300 347 PIDIEKR|LK 0.154 . PCHAS_1343300 349 DIEKRLK|IT 0.061 . PCHAS_1343300 357 TNETINK|HI 0.060 . PCHAS_1343300 366 LYFDDFK|ST 0.074 . PCHAS_1343300 370 DFKSTLK|NI 0.064 . PCHAS_1343300 381 SENMCVK|IA 0.089 . PCHAS_1343300 390 DNVQCWR|YL 0.088 . PCHAS_1343300 393 QCWRYLK|HL 0.099 . PCHAS_1343300 401 LPNIYIK|LS 0.062 . PCHAS_1343300 407 KLSNNTR|LL 0.082 . PCHAS_1343300 411 NTRLLWK|PS 0.066 . PCHAS_1343300 418 PSSYLYK|KE 0.072 . PCHAS_1343300 419 SSYLYKK|ES 0.096 . PCHAS_1343300 425 KESFWCK|GL 0.108 . PCHAS_1343300 429 WCKGLEK|QV 0.069 . PCHAS_1343300 434 EKQVNNK|PI 0.060 . PCHAS_1343300 443 LGLSFFK|NK 0.061 . PCHAS_1343300 445 LSFFKNK|QI 0.073 . PCHAS_1343300 452 QIIFDLK|NN 0.063 . PCHAS_1343300 455 FDLKNNK|IG 0.056 . PCHAS_1343300 471 SNPINTR|PR 0.082 . PCHAS_1343300 473 PINTRPR|TF 0.092 . PCHAS_1343300 481 FNEYNIK|EN 0.060 . PCHAS_1343300 487 KENYLYK|QS 0.071 . PCHAS_1343300 513 YIILYIK|KI 0.057 . PCHAS_1343300 514 IILYIKK|II 0.079 . ____________________________^_________________

  • Fasta :-

    >PCHAS_1343300 ATGGGGTTTTCTAAGTTATATAAATTTGTTACTTATTTTATAATAATAAATATTTTAGTT CAAGCAAATAGTGAAGATGTGTTGAATAAAAATAGTGGCAAAAATGAAGAAATATACAAA TATAAATTATATGGTGATATTGATCAATATGCATATTATTTTATGGATATAGATATAGGA ACACCTGGACAAAAAATTTCATTAATAGTAGACACAGGATCTTCTTCGTTAAGTTTCCCA TGCTCAGAATGTAAAGATTGTGGGGTGCATATGGAAAATCCCTTTAATTTAAATAATTCA TCAACCTCTTCAGTTTTATATTGTAATGATAATAGTAATTGTCCATATCATTTAAAATGT GTCAAAGGAAGGTGTGAATATTTACAGTCTTATTGTGAAGGATCTCGAATTAACGGTTTT TATTTTTTGGATTTTGTAAAACTTGAATCGTATAACAACACTAACAATGGTGACATAATT TTTAAGAAACATATGGGATGTCATATGCATGAAGAAGGTTTATTTTTACAACAACATGCG ACAGGAGTATTGGGATTAAGCTTAACAAAACCAAAAGGTGTTCCGACTTTTATTGATTTA TTATTTAAAAATTCACCTAAACTAAATAAGGTATTTTCATTATGTATTTCTGAATATGGA GGAGAAATGATTATAGGCGGGTATAGCAAAAATTATGTTATCAAAGATGTTTCAAATAAT GAAAAGAGTGATCAAATTGTGCATAATAAGGATGAAGATATTAATTCGGTTGATAAATCG ATGGAAATAAATAAAAATAAATCGATTGTAGATGATATAGTTTGGGAAGCTATAACTAAA AAATATTATTACTATATAAAAGTTGAAGGATTTGAATTATTTGGTACAACTTTTTCTCAT AATAATACAAGTATGGAGATGCTAGTAGATTCAGGTAGTACCTTTACACATTTACCTGAC GATTTATATAATAGTTTAAATTTTTTTTTTGATTTATTATGTATACATAATATGAACAAT CCTATTGATATAGAGAAAAGATTAAAAATAACAAATGAAACGATAAACAAACATATTTTA TATTTCGATGATTTTAAATCGACGTTAAAAAATATAATAAGTAGTGAAAATATGTGTGTA AAAATAGCTGATAATGTACAATGTTGGAGATATTTAAAACATTTACCAAATATATATATT AAACTATCTAATAATACAAGATTATTATGGAAACCCAGTTCTTATTTATATAAAAAGGAA TCATTTTGGTGTAAAGGGTTAGAAAAACAAGTGAATAATAAACCTATCCTGGGATTAAGC TTTTTTAAAAATAAACAAATTATATTTGATCTTAAAAATAATAAAATTGGATTTGTTGAA TCAAATTGTCCATCCAATCCGATAAACACAAGACCAAGAACTTTTAATGAATATAATATA AAAGAAAATTATTTATACAAACAGTCATATTTTAGCTTATATAGCTTGTCCATAATTATT GCATTAACATTTATACTTTATATTATTTTATACATTAAAAAAATCATATATAGCTATTAC AATCCGTTGCACGGAGAAAATACTTCGTCTGACTAA
  • Download Fasta

  • Fasta :-

    MGFSKLYKFVTYFIIINILVQANSEDVLNKNSGKNEEIYKYKLYGDIDQYAYYFMDIDIG TPGQKISLIVDTGSSSLSFPCSECKDCGVHMENPFNLNNSSTSSVLYCNDNSNCPYHLKC VKGRCEYLQSYCEGSRINGFYFLDFVKLESYNNTNNGDIIFKKHMGCHMHEEGLFLQQHA TGVLGLSLTKPKGVPTFIDLLFKNSPKLNKVFSLCISEYGGEMIIGGYSKNYVIKDVSNN EKSDQIVHNKDEDINSVDKSMEINKNKSIVDDIVWEAITKKYYYYIKVEGFELFGTTFSH NNTSMEMLVDSGSTFTHLPDDLYNSLNFFFDLLCIHNMNNPIDIEKRLKITNETINKHIL YFDDFKSTLKNIISSENMCVKIADNVQCWRYLKHLPNIYIKLSNNTRLLWKPSSYLYKKE SFWCKGLEKQVNNKPILGLSFFKNKQIIFDLKNNKIGFVESNCPSNPINTRPRTFNEYNI KENYLYKQSYFSLYSLSIIIALTFILYIILYIKKIIYSYYNPLHGENTSSD

  • title: catalytic residue
  • coordinates: D71,D310
No Results
No Results
IDSitePeptideScoreMethod
PCHAS_1343300268 SNKNKSIVDD0.996unsp

PCHAS_134330      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India