PCHAS_1347900 | proteasome subunit beta type-7, putative

_IDPredictionOTHERSPmTPCS_Position
PCHAS_1347900OTHER0.9998980.0000750.000027
No Results

  • Fasta :-

    >PCHAS_1347900 MKLDYINAIKEENGGYNFENLKRNEILKEKGVTFPQFRKTGTTICGIVCQNAVILGADTR ATEGPIVADKNCSKLHYISKNIYCAGAGVAGDLEHTTLWLQHNVELHRLNTKTQPRVAMC VSRLTQELFKYQGYKVCAIVLGGVDVTGPQLYGIHPHGSSCLLPFTALGSGSLNAMTVLE AKYRDNMTIEEGKELVCEAICAGIFNDLGSGGNVDICVITKDGTQHIRPYKQPNTRLYHL AHPTIFPKGTTPILYEKIESIKKHITIEDA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_1347900.fa Sequence name : PCHAS_1347900 Sequence length : 270 VALUES OF COMPUTED PARAMETERS Coef20 : 2.714 CoefTot : 0.009 ChDiff : 2 ZoneTo : 3 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.453 1.453 0.332 0.554 MesoH : -0.049 0.483 -0.191 0.288 MuHd_075 : 19.321 11.133 6.970 3.603 MuHd_095 : 1.233 2.590 1.253 0.406 MuHd_100 : 4.841 1.727 2.165 1.494 MuHd_105 : 9.749 7.494 3.534 2.629 Hmax_075 : -1.167 5.500 -1.843 3.120 Hmax_095 : -8.925 -0.525 -4.143 1.540 Hmax_100 : -0.500 1.700 -1.680 2.920 Hmax_105 : -6.183 4.783 -3.272 2.193 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9960 0.0040 DFMC : 0.9887 0.0113
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 270 PCHAS_1347900 MKLDYINAIKEENGGYNFENLKRNEILKEKGVTFPQFRKTGTTICGIVCQNAVILGADTRATEGPIVADKNCSKLHYISK 80 NIYCAGAGVAGDLEHTTLWLQHNVELHRLNTKTQPRVAMCVSRLTQELFKYQGYKVCAIVLGGVDVTGPQLYGIHPHGSS 160 CLLPFTALGSGSLNAMTVLEAKYRDNMTIEEGKELVCEAICAGIFNDLGSGGNVDICVITKDGTQHIRPYKQPNTRLYHL 240 AHPTIFPKGTTPILYEKIESIKKHITIEDA 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .............................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_1347900 2 -----MK|LD 0.058 . PCHAS_1347900 10 DYINAIK|EE 0.058 . PCHAS_1347900 22 YNFENLK|RN 0.056 . PCHAS_1347900 23 NFENLKR|NE 0.147 . PCHAS_1347900 28 KRNEILK|EK 0.090 . PCHAS_1347900 30 NEILKEK|GV 0.070 . PCHAS_1347900 38 VTFPQFR|KT 0.117 . PCHAS_1347900 39 TFPQFRK|TG 0.073 . PCHAS_1347900 60 ILGADTR|AT 0.099 . PCHAS_1347900 70 GPIVADK|NC 0.065 . PCHAS_1347900 74 ADKNCSK|LH 0.059 . PCHAS_1347900 80 KLHYISK|NI 0.077 . PCHAS_1347900 108 HNVELHR|LN 0.083 . PCHAS_1347900 112 LHRLNTK|TQ 0.062 . PCHAS_1347900 116 NTKTQPR|VA 0.096 . PCHAS_1347900 123 VAMCVSR|LT 0.092 . PCHAS_1347900 130 LTQELFK|YQ 0.074 . PCHAS_1347900 135 FKYQGYK|VC 0.069 . PCHAS_1347900 182 MTVLEAK|YR 0.064 . PCHAS_1347900 184 VLEAKYR|DN 0.166 . PCHAS_1347900 193 MTIEEGK|EL 0.057 . PCHAS_1347900 221 DICVITK|DG 0.069 . PCHAS_1347900 228 DGTQHIR|PY 0.080 . PCHAS_1347900 231 QHIRPYK|QP 0.124 . PCHAS_1347900 236 YKQPNTR|LY 0.099 . PCHAS_1347900 248 HPTIFPK|GT 0.084 . PCHAS_1347900 257 TPILYEK|IE 0.066 . PCHAS_1347900 262 EKIESIK|KH 0.068 . PCHAS_1347900 263 KIESIKK|HI 0.090 . ____________________________^_________________

  • Fasta :-

    >PCHAS_1347900 ATGAAACTCGATTATATAAATGCGATCAAAGAAGAAAATGGAGGATATAATTTTGAAAAC CTAAAGAGAAATGAAATTTTGAAGGAAAAAGGAGTAACATTCCCACAATTTCGAAAAACA GGAACAACTATTTGTGGAATAGTTTGTCAAAATGCAGTTATATTAGGAGCCGATACACGA GCAACAGAAGGCCCAATAGTTGCAGATAAAAATTGTAGTAAATTACATTACATAAGCAAA AATATCTATTGCGCAGGTGCAGGTGTGGCCGGAGATTTAGAGCACACTACATTATGGCTA CAACACAATGTTGAGTTACACCGTTTGAATACAAAAACTCAACCTAGAGTCGCTATGTGC GTGTCGAGGTTAACTCAAGAATTATTTAAATATCAAGGTTACAAAGTATGTGCAATAGTA TTAGGAGGTGTAGATGTTACTGGACCACAGTTATATGGTATACACCCTCATGGGTCGTCT TGCCTCTTACCATTTACAGCTTTAGGATCAGGATCTTTAAATGCTATGACAGTTTTAGAG GCAAAATATAGAGATAACATGACAATAGAAGAAGGAAAAGAACTTGTGTGTGAAGCTATA TGTGCAGGTATCTTTAATGATTTAGGTTCTGGTGGAAATGTAGATATTTGTGTCATAACA AAAGATGGTACTCAACATATAAGACCTTATAAGCAACCAAATACTCGATTGTATCATTTA GCACATCCAACTATTTTTCCAAAGGGAACTACACCAATTTTATATGAAAAAATTGAAAGC ATTAAAAAACATATTACTATAGAAGATGCATAA
  • Download Fasta

  • Fasta :-

    MKLDYINAIKEENGGYNFENLKRNEILKEKGVTFPQFRKTGTTICGIVCQNAVILGADTR ATEGPIVADKNCSKLHYISKNIYCAGAGVAGDLEHTTLWLQHNVELHRLNTKTQPRVAMC VSRLTQELFKYQGYKVCAIVLGGVDVTGPQLYGIHPHGSSCLLPFTALGSGSLNAMTVLE AKYRDNMTIEEGKELVCEAICAGIFNDLGSGGNVDICVITKDGTQHIRPYKQPNTRLYHL AHPTIFPKGTTPILYEKIESIKKHITIEDA

  • title: active site
  • coordinates: T42,D58,R60,K74,S170,D207,S210,G211
No Results
No Results
No Results

PCHAS_134790      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India