PCHAS_1362700 | rhomboid protease ROM6, putative

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PCHAS_1362700OTHER0.7522060.0000310.247763
No Results

  • Fasta :-

    >PCHAS_1362700 MFNYYKYFRTNYFKYRFLHINTSKHFHAFTKVVGKIQETAIKNKEKNIKLKEKVKLIIFT SFYFFACDYLYHVYILKDNKKVEEADAYTTKEKVLTHNIKKDENKYQNNEMMPSFIKWIN IFSRPEQTDKYILQKNGINSSNQNTHYCDSNADDENTYVIKINNIKKKQDEQNYQRDEFT VIRNNIFGYNMGNVIGGDTGKNPIHERNFKEIIENNLYRKDLLSGHNLFLAANGVIFLCW RLGDIVRNKRFYNFMCRHFICSYENIKKKRYHTIFTASISHMTLPHFLFNMWAFHTITNT LLYPEIKEQKTNYYYFFNYKSNILEKKITNKDIISVCLLSSVMSTIPYVLINRSTQLLGA SGAIMGLVYTLSVVKPNEIFVSVFPFPYLKLSALQLCHMSILTNFIFLFYKRNNFNIAWS AHLFGLLGGALYSYYQRKINNNYNYYPFIQLSTQNGYLDYKNTYLDLLDFMKTLKLQTIS FFSLDQKNIQQINKQLYMIQYTKSQRRAKIHAMKINNLKQMEK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_1362700.fa Sequence name : PCHAS_1362700 Sequence length : 523 VALUES OF COMPUTED PARAMETERS Coef20 : 3.941 CoefTot : -2.229 ChDiff : 32 ZoneTo : 37 KR : 7 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.812 1.841 0.404 0.657 MesoH : 0.795 1.124 0.006 0.442 MuHd_075 : 27.962 16.968 8.476 6.181 MuHd_095 : 34.969 19.175 8.939 7.570 MuHd_100 : 34.492 17.752 9.648 6.609 MuHd_105 : 39.137 25.232 12.117 8.095 Hmax_075 : 16.800 11.900 1.674 4.935 Hmax_095 : 12.200 11.287 0.003 4.498 Hmax_100 : 13.900 14.600 0.995 5.550 Hmax_105 : 19.717 20.767 3.715 6.942 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0706 0.9294 DFMC : 0.1519 0.8481 This protein is probably imported in mitochondria. f(Ser) = 0.0270 f(Arg) = 0.0541 CMi = 0.18553 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 523 PCHAS_1362700 MFNYYKYFRTNYFKYRFLHINTSKHFHAFTKVVGKIQETAIKNKEKNIKLKEKVKLIIFTSFYFFACDYLYHVYILKDNK 80 KVEEADAYTTKEKVLTHNIKKDENKYQNNEMMPSFIKWINIFSRPEQTDKYILQKNGINSSNQNTHYCDSNADDENTYVI 160 KINNIKKKQDEQNYQRDEFTVIRNNIFGYNMGNVIGGDTGKNPIHERNFKEIIENNLYRKDLLSGHNLFLAANGVIFLCW 240 RLGDIVRNKRFYNFMCRHFICSYENIKKKRYHTIFTASISHMTLPHFLFNMWAFHTITNTLLYPEIKEQKTNYYYFFNYK 320 SNILEKKITNKDIISVCLLSSVMSTIPYVLINRSTQLLGASGAIMGLVYTLSVVKPNEIFVSVFPFPYLKLSALQLCHMS 400 ILTNFIFLFYKRNNFNIAWSAHLFGLLGGALYSYYQRKINNNYNYYPFIQLSTQNGYLDYKNTYLDLLDFMKTLKLQTIS 480 FFSLDQKNIQQINKQLYMIQYTKSQRRAKIHAMKINNLKQMEK 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ........................................... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_1362700 6 -MFNYYK|YF 0.064 . PCHAS_1362700 9 NYYKYFR|TN 0.077 . PCHAS_1362700 14 FRTNYFK|YR 0.068 . PCHAS_1362700 16 TNYFKYR|FL 0.153 . PCHAS_1362700 24 LHINTSK|HF 0.070 . PCHAS_1362700 31 HFHAFTK|VV 0.139 . PCHAS_1362700 35 FTKVVGK|IQ 0.076 . PCHAS_1362700 42 IQETAIK|NK 0.065 . PCHAS_1362700 44 ETAIKNK|EK 0.071 . PCHAS_1362700 46 AIKNKEK|NI 0.077 . PCHAS_1362700 49 NKEKNIK|LK 0.070 . PCHAS_1362700 51 EKNIKLK|EK 0.070 . PCHAS_1362700 53 NIKLKEK|VK 0.070 . PCHAS_1362700 55 KLKEKVK|LI 0.062 . PCHAS_1362700 77 YHVYILK|DN 0.073 . PCHAS_1362700 80 YILKDNK|KV 0.070 . PCHAS_1362700 81 ILKDNKK|VE 0.088 . PCHAS_1362700 91 ADAYTTK|EK 0.058 . PCHAS_1362700 93 AYTTKEK|VL 0.060 . PCHAS_1362700 100 VLTHNIK|KD 0.062 . PCHAS_1362700 101 LTHNIKK|DE 0.137 . PCHAS_1362700 105 IKKDENK|YQ 0.073 . PCHAS_1362700 117 MMPSFIK|WI 0.060 . PCHAS_1362700 124 WINIFSR|PE 0.086 . PCHAS_1362700 130 RPEQTDK|YI 0.074 . PCHAS_1362700 135 DKYILQK|NG 0.060 . PCHAS_1362700 161 ENTYVIK|IN 0.065 . PCHAS_1362700 166 IKINNIK|KK 0.065 . PCHAS_1362700 167 KINNIKK|KQ 0.115 . PCHAS_1362700 168 INNIKKK|QD 0.192 . PCHAS_1362700 176 DEQNYQR|DE 0.102 . PCHAS_1362700 183 DEFTVIR|NN 0.086 . PCHAS_1362700 201 IGGDTGK|NP 0.063 . PCHAS_1362700 207 KNPIHER|NF 0.096 . PCHAS_1362700 210 IHERNFK|EI 0.117 . PCHAS_1362700 219 IENNLYR|KD 0.093 . PCHAS_1362700 220 ENNLYRK|DL 0.104 . PCHAS_1362700 241 VIFLCWR|LG 0.074 . PCHAS_1362700 247 RLGDIVR|NK 0.080 . PCHAS_1362700 249 GDIVRNK|RF 0.059 . PCHAS_1362700 250 DIVRNKR|FY 0.412 . PCHAS_1362700 257 FYNFMCR|HF 0.087 . PCHAS_1362700 267 CSYENIK|KK 0.056 . PCHAS_1362700 268 SYENIKK|KR 0.084 . PCHAS_1362700 269 YENIKKK|RY 0.153 . PCHAS_1362700 270 ENIKKKR|YH 0.253 . PCHAS_1362700 307 LLYPEIK|EQ 0.060 . PCHAS_1362700 310 PEIKEQK|TN 0.060 . PCHAS_1362700 320 YYFFNYK|SN 0.069 . PCHAS_1362700 326 KSNILEK|KI 0.071 . PCHAS_1362700 327 SNILEKK|IT 0.116 . PCHAS_1362700 331 EKKITNK|DI 0.076 . PCHAS_1362700 353 PYVLINR|ST 0.089 . PCHAS_1362700 375 YTLSVVK|PN 0.059 . PCHAS_1362700 390 FPFPYLK|LS 0.059 . PCHAS_1362700 411 FIFLFYK|RN 0.059 . PCHAS_1362700 412 IFLFYKR|NN 0.136 . PCHAS_1362700 437 LYSYYQR|KI 0.090 . PCHAS_1362700 438 YSYYQRK|IN 0.086 . PCHAS_1362700 461 NGYLDYK|NT 0.060 . PCHAS_1362700 472 DLLDFMK|TL 0.059 . PCHAS_1362700 475 DFMKTLK|LQ 0.058 . PCHAS_1362700 487 FFSLDQK|NI 0.076 . PCHAS_1362700 494 NIQQINK|QL 0.071 . PCHAS_1362700 503 YMIQYTK|SQ 0.070 . PCHAS_1362700 506 QYTKSQR|RA 0.079 . PCHAS_1362700 507 YTKSQRR|AK 0.149 . PCHAS_1362700 509 KSQRRAK|IH 0.171 . PCHAS_1362700 514 AKIHAMK|IN 0.071 . PCHAS_1362700 519 MKINNLK|QM 0.072 . PCHAS_1362700 523 NLKQMEK|-- 0.065 . ____________________________^_________________

  • Fasta :-

    >PCHAS_1362700 ATGTTTAATTATTATAAGTACTTTAGAACTAACTATTTTAAATATCGCTTTCTACATATA AATACAAGCAAACATTTTCATGCTTTTACCAAAGTGGTGGGAAAAATACAAGAAACTGCA ATTAAAAACAAGGAGAAAAATATAAAGCTGAAAGAAAAAGTCAAGCTTATTATTTTTACC TCGTTTTATTTTTTTGCTTGTGATTATTTATATCATGTGTATATATTAAAGGACAACAAA AAGGTGGAAGAAGCTGATGCATATACAACAAAAGAAAAAGTGCTAACACATAATATCAAG AAAGATGAAAATAAATACCAGAATAATGAAATGATGCCCAGTTTTATTAAATGGATAAAT ATATTTTCACGACCTGAACAAACGGACAAATATATTTTACAAAAGAACGGAATAAATAGC AGCAATCAAAACACCCATTATTGTGATAGCAATGCAGATGATGAAAATACGTATGTTATA AAAATAAATAATATAAAAAAAAAACAAGACGAACAAAATTATCAAAGGGATGAATTTACT GTCATTAGAAATAATATATTTGGATACAATATGGGGAATGTCATTGGTGGCGACACAGGA AAAAATCCAATACACGAAAGAAATTTTAAAGAAATAATTGAAAATAATTTATATCGAAAA GATTTATTAAGTGGACACAACCTTTTTTTGGCTGCTAATGGAGTTATATTTTTATGTTGG AGATTGGGTGATATTGTTCGAAATAAAAGATTTTATAATTTTATGTGTAGACATTTTATT TGTTCATATGAAAATATAAAAAAAAAACGTTATCATACAATTTTTACAGCTAGTATTAGT CATATGACATTGCCACATTTCTTATTCAACATGTGGGCATTCCATACAATTACTAATACC TTATTATATCCAGAAATTAAAGAACAAAAAACAAATTACTATTATTTTTTTAATTACAAA TCGAATATTTTAGAAAAGAAAATTACAAATAAAGATATAATTAGTGTTTGCCTTTTATCT TCTGTAATGTCAACTATTCCATATGTTTTAATTAACAGATCGACTCAACTTTTAGGCGCA TCTGGAGCTATAATGGGGCTCGTATATACTTTATCAGTAGTTAAACCAAATGAAATATTT GTTTCTGTATTCCCATTTCCTTATTTAAAACTATCAGCCCTACAATTATGTCACATGTCG ATTTTAACAAATTTTATTTTTTTATTTTACAAAAGAAATAATTTTAATATTGCATGGTCA GCACATTTATTTGGTTTATTAGGCGGTGCATTATATAGCTATTATCAAAGAAAAATAAAT AACAACTATAATTATTATCCCTTTATTCAGCTATCTACTCAAAATGGCTACCTTGATTAC AAAAATACATATCTAGATTTATTAGATTTCATGAAAACCTTAAAACTTCAAACTATATCT TTTTTTTCATTAGATCAGAAAAATATACAACAAATAAACAAACAATTATACATGATCCAA TATACAAAATCACAAAGACGCGCAAAAATTCATGCAATGAAAATTAATAATTTGAAACAA ATGGAAAAGTGA
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  • Fasta :-

    MFNYYKYFRTNYFKYRFLHINTSKHFHAFTKVVGKIQETAIKNKEKNIKLKEKVKLIIFT SFYFFACDYLYHVYILKDNKKVEEADAYTTKEKVLTHNIKKDENKYQNNEMMPSFIKWIN IFSRPEQTDKYILQKNGINSSNQNTHYCDSNADDENTYVIKINNIKKKQDEQNYQRDEFT VIRNNIFGYNMGNVIGGDTGKNPIHERNFKEIIENNLYRKDLLSGHNLFLAANGVIFLCW RLGDIVRNKRFYNFMCRHFICSYENIKKKRYHTIFTASISHMTLPHFLFNMWAFHTITNT LLYPEIKEQKTNYYYFFNYKSNILEKKITNKDIISVCLLSSVMSTIPYVLINRSTQLLGA SGAIMGLVYTLSVVKPNEIFVSVFPFPYLKLSALQLCHMSILTNFIFLFYKRNNFNIAWS AHLFGLLGGALYSYYQRKINNNYNYYPFIQLSTQNGYLDYKNTYLDLLDFMKTLKLQTIS FFSLDQKNIQQINKQLYMIQYTKSQRRAKIHAMKINNLKQMEK

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PCHAS_136270      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India