PCHAS_1401000 | lysophospholipase, putative

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_IDPredictionOTHERSPmTPCS_Position
PCHAS_1401000OTHER0.9996880.0002380.000074
No Results

  • Fasta :-

    >PCHAS_1401000 MVMEGVELNNTELRNTKSNLDGNPNIGLLRNKNGLLLKTYAWIVKNSIGNVLLIHGLKAH TRLTFMKINLKMPNNNEGVIVDSDNYYIYKDSWIEKFNQNGYSVYALDLQGHGESQAWKN VRGDFSSFDDLVDDVIQYINQIQDESHNIVASKKKKLPMYLVGYSMGGTIALRTLQVLNE EKEDRIKARNSSNYKNSNTILDNSTNANQIDNNMTNSNDYGSDKPDANGNHIGRYNYLDK LNIKGCVSLSGMMILKTTWNAGNNAMKYLYLPVASFLSSITPNAMLPSDPDYKQFEYINN TYKYDKFRCPEETKFIYIYELIKASVTVNCHINYMPKDIPLLFVHSKDDSVCYYEGTISF HNKAKVKKKDLHIVDDMDHAITGAPGNEEILKKVINWISDLRMNDEDEK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_1401000.fa Sequence name : PCHAS_1401000 Sequence length : 409 VALUES OF COMPUTED PARAMETERS Coef20 : 3.745 CoefTot : 0.000 ChDiff : -3 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.294 1.088 0.055 0.497 MesoH : -0.676 -0.040 -0.476 0.146 MuHd_075 : 14.301 10.606 2.964 3.438 MuHd_095 : 12.553 10.141 2.999 3.430 MuHd_100 : 21.911 14.072 5.689 5.159 MuHd_105 : 26.428 14.929 7.117 5.736 Hmax_075 : -1.633 2.800 -3.549 0.960 Hmax_095 : -0.000 4.900 -2.368 1.829 Hmax_100 : -2.000 4.100 -2.288 2.210 Hmax_105 : 9.100 11.550 0.152 3.628 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9241 0.0759 DFMC : 0.9241 0.0759
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 409 PCHAS_1401000 MVMEGVELNNTELRNTKSNLDGNPNIGLLRNKNGLLLKTYAWIVKNSIGNVLLIHGLKAHTRLTFMKINLKMPNNNEGVI 80 VDSDNYYIYKDSWIEKFNQNGYSVYALDLQGHGESQAWKNVRGDFSSFDDLVDDVIQYINQIQDESHNIVASKKKKLPMY 160 LVGYSMGGTIALRTLQVLNEEKEDRIKARNSSNYKNSNTILDNSTNANQIDNNMTNSNDYGSDKPDANGNHIGRYNYLDK 240 LNIKGCVSLSGMMILKTTWNAGNNAMKYLYLPVASFLSSITPNAMLPSDPDYKQFEYINNTYKYDKFRCPEETKFIYIYE 320 LIKASVTVNCHINYMPKDIPLLFVHSKDDSVCYYEGTISFHNKAKVKKKDLHIVDDMDHAITGAPGNEEILKKVINWISD 400 LRMNDEDEK 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ......... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_1401000 14 LNNTELR|NT 0.102 . PCHAS_1401000 17 TELRNTK|SN 0.191 . PCHAS_1401000 30 PNIGLLR|NK 0.072 . PCHAS_1401000 32 IGLLRNK|NG 0.051 . PCHAS_1401000 38 KNGLLLK|TY 0.064 . PCHAS_1401000 45 TYAWIVK|NS 0.062 . PCHAS_1401000 58 LLIHGLK|AH 0.059 . PCHAS_1401000 62 GLKAHTR|LT 0.110 . PCHAS_1401000 67 TRLTFMK|IN 0.075 . PCHAS_1401000 71 FMKINLK|MP 0.058 . PCHAS_1401000 90 DNYYIYK|DS 0.074 . PCHAS_1401000 96 KDSWIEK|FN 0.080 . PCHAS_1401000 119 GESQAWK|NV 0.097 . PCHAS_1401000 122 QAWKNVR|GD 0.112 . PCHAS_1401000 153 HNIVASK|KK 0.058 . PCHAS_1401000 154 NIVASKK|KK 0.085 . PCHAS_1401000 155 IVASKKK|KL 0.115 . PCHAS_1401000 156 VASKKKK|LP 0.110 . PCHAS_1401000 173 GGTIALR|TL 0.069 . PCHAS_1401000 182 QVLNEEK|ED 0.056 . PCHAS_1401000 185 NEEKEDR|IK 0.072 . PCHAS_1401000 187 EKEDRIK|AR 0.057 . PCHAS_1401000 189 EDRIKAR|NS 0.161 . PCHAS_1401000 195 RNSSNYK|NS 0.082 . PCHAS_1401000 224 NDYGSDK|PD 0.067 . PCHAS_1401000 234 NGNHIGR|YN 0.085 . PCHAS_1401000 240 RYNYLDK|LN 0.068 . PCHAS_1401000 244 LDKLNIK|GC 0.059 . PCHAS_1401000 256 SGMMILK|TT 0.068 . PCHAS_1401000 267 AGNNAMK|YL 0.074 . PCHAS_1401000 293 PSDPDYK|QF 0.068 . PCHAS_1401000 303 YINNTYK|YD 0.061 . PCHAS_1401000 306 NTYKYDK|FR 0.073 . PCHAS_1401000 308 YKYDKFR|CP 0.103 . PCHAS_1401000 314 RCPEETK|FI 0.069 . PCHAS_1401000 323 YIYELIK|AS 0.062 . PCHAS_1401000 337 HINYMPK|DI 0.077 . PCHAS_1401000 347 LLFVHSK|DD 0.081 . PCHAS_1401000 363 TISFHNK|AK 0.091 . PCHAS_1401000 365 SFHNKAK|VK 0.081 . PCHAS_1401000 367 HNKAKVK|KK 0.068 . PCHAS_1401000 368 NKAKVKK|KD 0.126 . PCHAS_1401000 369 KAKVKKK|DL 0.259 . PCHAS_1401000 392 GNEEILK|KV 0.074 . PCHAS_1401000 393 NEEILKK|VI 0.097 . PCHAS_1401000 402 NWISDLR|MN 0.084 . PCHAS_1401000 409 MNDEDEK|-- 0.061 . ____________________________^_________________

  • Fasta :-

    >PCHAS_1401000 ATGGTGATGGAAGGAGTTGAATTGAATAATACTGAATTAAGAAATACAAAATCCAATTTA GATGGAAATCCTAATATAGGTTTGTTACGTAATAAAAATGGTTTGCTTTTAAAAACATAC GCGTGGATCGTTAAAAATTCTATAGGGAATGTGTTGTTAATACATGGATTAAAAGCTCAT ACTCGATTAACTTTTATGAAAATCAATTTAAAAATGCCAAATAACAATGAAGGTGTAATA GTAGACAGTGATAATTATTATATTTACAAAGATAGTTGGATTGAAAAATTTAATCAAAAT GGTTATTCAGTATATGCACTAGATTTGCAAGGACATGGCGAATCACAGGCATGGAAAAAT GTAAGAGGCGATTTTAGTTCTTTCGACGATCTAGTTGATGATGTAATACAATATATAAAT CAAATTCAAGATGAATCTCATAATATAGTGGCATCTAAAAAAAAAAAACTTCCTATGTAT CTTGTTGGGTATTCGATGGGAGGAACTATTGCTTTAAGAACCTTACAAGTATTAAATGAA GAAAAAGAAGATAGAATTAAGGCGAGGAATTCAAGTAACTATAAAAATAGTAACACCATT TTAGATAACTCTACTAATGCTAATCAAATTGATAATAATATGACTAATTCTAATGATTAT GGTTCCGATAAGCCCGATGCTAATGGTAATCATATAGGACGCTATAATTATTTAGATAAA TTAAATATTAAAGGTTGCGTATCTTTATCTGGCATGATGATATTAAAAACAACATGGAAT GCTGGAAACAATGCAATGAAGTATTTGTATTTACCTGTAGCAAGTTTCCTGTCTAGTATC ACGCCTAATGCAATGCTTCCGTCTGATCCAGATTATAAACAGTTCGAATATATTAATAAT ACATATAAATATGATAAATTTAGATGTCCTGAAGAGACAAAATTTATATATATATATGAA CTTATAAAAGCATCGGTCACAGTGAATTGCCATATTAATTATATGCCAAAAGATATTCCT TTATTATTTGTACATTCAAAAGATGATAGTGTTTGTTATTATGAAGGGACTATTTCGTTT CACAATAAAGCAAAAGTTAAAAAAAAAGATTTACATATTGTTGATGATATGGATCATGCT ATAACGGGAGCGCCAGGAAATGAAGAAATTTTAAAAAAAGTTATTAATTGGATTTCTGAT TTAAGAATGAATGATGAAGACGAAAAATAA
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  • Fasta :-

    MVMEGVELNNTELRNTKSNLDGNPNIGLLRNKNGLLLKTYAWIVKNSIGNVLLIHGLKAH TRLTFMKINLKMPNNNEGVIVDSDNYYIYKDSWIEKFNQNGYSVYALDLQGHGESQAWKN VRGDFSSFDDLVDDVIQYINQIQDESHNIVASKKKKLPMYLVGYSMGGTIALRTLQVLNE EKEDRIKARNSSNYKNSNTILDNSTNANQIDNNMTNSNDYGSDKPDANGNHIGRYNYLDK LNIKGCVSLSGMMILKTTWNAGNNAMKYLYLPVASFLSSITPNAMLPSDPDYKQFEYINN TYKYDKFRCPEETKFIYIYELIKASVTVNCHINYMPKDIPLLFVHSKDDSVCYYEGTISF HNKAKVKKKDLHIVDDMDHAITGAPGNEEILKKVINWISDLRMNDEDEK

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PCHAS_140100      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India