PCHAS_1406000 | site-2 protease S2P, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PCHAS_1406000OTHER0.9999920.0000000.000008
No Results

  • Fasta :-

    >PCHAS_1406000 MTPRNIISYFNDVQTEKRQLSSNWLLIHNEKSYQDYKHQSYLSLILSLLPLFLISVIHLS ITMNGYYIGHLFLTISYLLSICFFILYFYNSYTIFVLFVFFSFIISLCLHEFSHALVAYK YGDITMVYKGYLYLDILNYLDIFHTLVIPLVTLFITGFGIPGNLYWLQLHFIRSRFQLSF IFLSGPISDILYILLFVSFYNMYKFFKNNKKFNVKPHPALFISLATSISFLVESFLLNIC PILGFDGWGIIEPYLPCFLNDLINEEIVYNFLSYVCPLLVFIYFNFIETKFLFFTKITNY ILQDLLGIAIYHAAYGADSFPTLYSYLKKL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_1406000.fa Sequence name : PCHAS_1406000 Sequence length : 330 VALUES OF COMPUTED PARAMETERS Coef20 : 3.887 CoefTot : -0.431 ChDiff : 0 ZoneTo : 11 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.694 2.794 0.579 0.916 MesoH : 1.675 1.728 0.227 0.686 MuHd_075 : 23.871 10.594 4.006 5.627 MuHd_095 : 17.139 11.591 3.794 4.137 MuHd_100 : 20.496 14.535 4.840 6.216 MuHd_105 : 23.621 17.725 6.644 7.595 Hmax_075 : 2.917 1.750 -2.743 1.902 Hmax_095 : -0.262 3.500 -2.798 1.986 Hmax_100 : 0.900 7.000 -1.797 2.870 Hmax_105 : 4.083 12.250 -0.416 4.340 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8386 0.1614 DFMC : 0.8737 0.1263
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 330 PCHAS_1406000 MTPRNIISYFNDVQTEKRQLSSNWLLIHNEKSYQDYKHQSYLSLILSLLPLFLISVIHLSITMNGYYIGHLFLTISYLLS 80 ICFFILYFYNSYTIFVLFVFFSFIISLCLHEFSHALVAYKYGDITMVYKGYLYLDILNYLDIFHTLVIPLVTLFITGFGI 160 PGNLYWLQLHFIRSRFQLSFIFLSGPISDILYILLFVSFYNMYKFFKNNKKFNVKPHPALFISLATSISFLVESFLLNIC 240 PILGFDGWGIIEPYLPCFLNDLINEEIVYNFLSYVCPLLVFIYFNFIETKFLFFTKITNYILQDLLGIAIYHAAYGADSF 320 PTLYSYLKKL 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .......... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_1406000 4 ---MTPR|NI 0.103 . PCHAS_1406000 17 NDVQTEK|RQ 0.054 . PCHAS_1406000 18 DVQTEKR|QL 0.150 . PCHAS_1406000 31 LLIHNEK|SY 0.093 . PCHAS_1406000 37 KSYQDYK|HQ 0.060 . PCHAS_1406000 120 HALVAYK|YG 0.065 . PCHAS_1406000 129 DITMVYK|GY 0.057 . PCHAS_1406000 173 LQLHFIR|SR 0.105 . PCHAS_1406000 175 LHFIRSR|FQ 0.076 . PCHAS_1406000 204 SFYNMYK|FF 0.060 . PCHAS_1406000 207 NMYKFFK|NN 0.062 . PCHAS_1406000 210 KFFKNNK|KF 0.060 . PCHAS_1406000 211 FFKNNKK|FN 0.099 . PCHAS_1406000 215 NKKFNVK|PH 0.061 . PCHAS_1406000 290 FNFIETK|FL 0.067 . PCHAS_1406000 296 KFLFFTK|IT 0.070 . PCHAS_1406000 328 TLYSYLK|KL 0.063 . PCHAS_1406000 329 LYSYLKK|L- 0.114 . ____________________________^_________________

  • Fasta :-

    >PCHAS_1406000 ATGACTCCAAGAAATATTATATCATATTTTAATGATGTTCAAACGGAGAAAAGGCAATTA TCAAGTAATTGGTTGTTAATACATAATGAAAAAAGTTATCAGGATTATAAGCATCAAAGT TATTTATCACTTATATTGTCATTGCTACCATTATTTTTGATAAGTGTAATACATTTATCA ATTACAATGAATGGCTATTATATTGGGCATTTATTTTTAACAATATCATATTTGCTTTCC ATTTGTTTTTTTATTTTATATTTTTATAATTCTTATACTATATTTGTTTTGTTTGTATTT TTTTCATTTATAATATCTTTATGTTTACATGAGTTTTCTCATGCTTTAGTTGCTTACAAA TATGGCGATATTACTATGGTTTATAAAGGGTATTTATATTTGGACATTTTGAATTATTTG GACATATTCCATACGTTGGTAATACCATTAGTAACATTATTTATAACAGGATTTGGCATA CCAGGAAATTTATATTGGCTGCAACTACATTTTATCAGAAGTAGATTTCAGTTATCTTTT ATATTTTTGTCCGGCCCAATATCAGATATTTTATATATTTTATTATTTGTTTCTTTTTAT AACATGTACAAATTTTTTAAAAATAATAAAAAATTTAATGTGAAGCCACACCCTGCTTTA TTCATATCTTTAGCAACGTCAATATCTTTCCTAGTAGAATCATTTCTTTTAAATATTTGC CCTATTCTTGGATTTGATGGATGGGGGATTATCGAGCCATATTTGCCTTGTTTCTTAAAC GACTTAATCAACGAGGAGATTGTTTACAACTTCTTATCTTACGTATGCCCACTTCTTGTT TTTATATATTTCAATTTTATTGAGACAAAATTTCTTTTTTTCACAAAAATTACAAATTAC ATATTACAAGATCTGTTGGGAATTGCAATATATCATGCAGCCTATGGCGCCGATTCATTT CCAACATTGTATTCATATCTCAAAAAACTATGA
  • Download Fasta

  • Fasta :-

    MTPRNIISYFNDVQTEKRQLSSNWLLIHNEKSYQDYKHQSYLSLILSLLPLFLISVIHLS ITMNGYYIGHLFLTISYLLSICFFILYFYNSYTIFVLFVFFSFIISLCLHEFSHALVAYK YGDITMVYKGYLYLDILNYLDIFHTLVIPLVTLFITGFGIPGNLYWLQLHFIRSRFQLSF IFLSGPISDILYILLFVSFYNMYKFFKNNKKFNVKPHPALFISLATSISFLVESFLLNIC PILGFDGWGIIEPYLPCFLNDLINEEIVYNFLSYVCPLLVFIYFNFIETKFLFFTKITNY ILQDLLGIAIYHAAYGADSFPTLYSYLKKL

    No Results
  • title: active site
  • coordinates: H110,E111,H114,N238,D246
No Results
No Results
No Results

PCHAS_140600      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India