PCHAS_1420500 | microsomal signal peptidase, putative

_IDPredictionOTHERSPmTPCS_Position
PCHAS_1420500OTHER0.9412400.0001400.058620
No Results

  • Fasta :-

    >PCHAS_1420500 MNRFYHYTRNIYSSKCFKNDSFFYSKINLKFVSYNAKNGTHKYSAKINNAYAFRKNVNLK KINNFPKGIINMPYSCYRTYLLKKYGLTKRPEGYNTNITKNRIERYFNFAEIYHSLNFIK NVILSLLFIYGINNYVFDMTLTSGSSMYPLINKDGVILFYICDCSLRFFNELRNVAIYNY MNILYKIYNIIHGNFDNINFVKVKNTIANKIENLKNKIKSNQNVYKRGDVVLLISPVNSN KRVCKRIIGIENDKLYVNDFNSFVEVPKNHIWIEGDNKQDSFDSRNYGCVNINLVIGKIF FLLDPFRSFSFITNKGNCGIEPDRFVHMSN
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_1420500.fa Sequence name : PCHAS_1420500 Sequence length : 330 VALUES OF COMPUTED PARAMETERS Coef20 : 3.883 CoefTot : -4.643 ChDiff : 25 ZoneTo : 91 KR : 19 DE : 1 CleavSite : 92 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.953 1.741 0.109 0.647 MesoH : -0.106 0.668 -0.234 0.337 MuHd_075 : 36.862 23.476 11.451 7.963 MuHd_095 : 38.316 25.071 12.067 8.939 MuHd_100 : 43.767 28.768 13.550 9.616 MuHd_105 : 41.839 30.115 13.956 9.004 Hmax_075 : 11.700 12.017 3.456 4.515 Hmax_095 : 14.400 13.300 3.474 5.900 Hmax_100 : 17.500 16.600 4.388 5.360 Hmax_105 : 18.550 19.200 4.815 6.150 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0221 0.9779 DFMC : 0.0268 0.9732 This protein is probably imported in mitochondria. f(Ser) = 0.0769 f(Arg) = 0.0549 CMi = 0.52356 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 330 PCHAS_1420500 MNRFYHYTRNIYSSKCFKNDSFFYSKINLKFVSYNAKNGTHKYSAKINNAYAFRKNVNLKKINNFPKGIINMPYSCYRTY 80 LLKKYGLTKRPEGYNTNITKNRIERYFNFAEIYHSLNFIKNVILSLLFIYGINNYVFDMTLTSGSSMYPLINKDGVILFY 160 ICDCSLRFFNELRNVAIYNYMNILYKIYNIIHGNFDNINFVKVKNTIANKIENLKNKIKSNQNVYKRGDVVLLISPVNSN 240 KRVCKRIIGIENDKLYVNDFNSFVEVPKNHIWIEGDNKQDSFDSRNYGCVNINLVIGKIFFLLDPFRSFSFITNKGNCGI 320 EPDRFVHMSN 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .......... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_1420500 3 ----MNR|FY 0.104 . PCHAS_1420500 9 RFYHYTR|NI 0.088 . PCHAS_1420500 15 RNIYSSK|CF 0.061 . PCHAS_1420500 18 YSSKCFK|ND 0.065 . PCHAS_1420500 26 DSFFYSK|IN 0.056 . PCHAS_1420500 30 YSKINLK|FV 0.080 . PCHAS_1420500 37 FVSYNAK|NG 0.068 . PCHAS_1420500 42 AKNGTHK|YS 0.081 . PCHAS_1420500 46 THKYSAK|IN 0.077 . PCHAS_1420500 54 NNAYAFR|KN 0.077 . PCHAS_1420500 55 NAYAFRK|NV 0.097 . PCHAS_1420500 60 RKNVNLK|KI 0.076 . PCHAS_1420500 61 KNVNLKK|IN 0.084 . PCHAS_1420500 67 KINNFPK|GI 0.089 . PCHAS_1420500 78 MPYSCYR|TY 0.079 . PCHAS_1420500 83 YRTYLLK|KY 0.060 . PCHAS_1420500 84 RTYLLKK|YG 0.101 . PCHAS_1420500 89 KKYGLTK|RP 0.065 . PCHAS_1420500 90 KYGLTKR|PE 0.160 . PCHAS_1420500 100 YNTNITK|NR 0.059 . PCHAS_1420500 102 TNITKNR|IE 0.098 . PCHAS_1420500 105 TKNRIER|YF 0.368 . PCHAS_1420500 120 HSLNFIK|NV 0.081 . PCHAS_1420500 153 MYPLINK|DG 0.055 . PCHAS_1420500 167 ICDCSLR|FF 0.086 . PCHAS_1420500 173 RFFNELR|NV 0.106 . PCHAS_1420500 186 YMNILYK|IY 0.070 . PCHAS_1420500 202 DNINFVK|VK 0.063 . PCHAS_1420500 204 INFVKVK|NT 0.071 . PCHAS_1420500 210 KNTIANK|IE 0.055 . PCHAS_1420500 215 NKIENLK|NK 0.060 . PCHAS_1420500 217 IENLKNK|IK 0.079 . PCHAS_1420500 219 NLKNKIK|SN 0.084 . PCHAS_1420500 226 SNQNVYK|RG 0.081 . PCHAS_1420500 227 NQNVYKR|GD 0.187 . PCHAS_1420500 241 SPVNSNK|RV 0.083 . PCHAS_1420500 242 PVNSNKR|VC 0.155 . PCHAS_1420500 245 SNKRVCK|RI 0.244 . PCHAS_1420500 246 NKRVCKR|II 0.326 . PCHAS_1420500 254 IGIENDK|LY 0.056 . PCHAS_1420500 268 SFVEVPK|NH 0.069 . PCHAS_1420500 278 WIEGDNK|QD 0.058 . PCHAS_1420500 285 QDSFDSR|NY 0.130 . PCHAS_1420500 298 INLVIGK|IF 0.060 . PCHAS_1420500 307 FLLDPFR|SF 0.117 . PCHAS_1420500 315 FSFITNK|GN 0.077 . PCHAS_1420500 324 CGIEPDR|FV 0.120 . ____________________________^_________________

  • Fasta :-

    >PCHAS_1420500 ATGAATAGATTTTATCATTATACGAGAAATATATACTCGTCAAAATGTTTTAAAAATGAT AGTTTTTTCTATAGTAAGATTAATCTGAAATTCGTTAGTTATAATGCAAAAAATGGGACG CATAAATACTCAGCTAAAATTAATAATGCATATGCATTCCGGAAAAATGTGAATTTAAAA AAAATAAACAATTTCCCCAAAGGTATTATTAATATGCCATATTCATGTTATAGAACATAT TTATTAAAGAAATATGGATTAACAAAAAGACCAGAAGGATATAATACAAATATAACTAAA AATAGAATTGAGAGATATTTTAACTTTGCTGAAATTTATCATTCATTAAATTTTATAAAA AATGTAATATTAAGTTTGCTGTTTATTTATGGGATAAATAATTATGTTTTTGACATGACG CTTACTAGTGGTTCTAGTATGTATCCATTAATAAATAAAGACGGGGTAATTTTATTTTAT ATTTGTGATTGTTCTTTACGATTTTTTAACGAACTGCGGAATGTGGCAATATATAATTAT ATGAATATATTATATAAAATTTATAATATTATTCATGGAAATTTTGATAACATAAATTTT GTAAAAGTTAAAAATACAATAGCAAACAAAATTGAGAATTTAAAAAATAAGATCAAATCA AATCAAAATGTCTATAAAAGAGGTGATGTTGTATTATTAATATCACCAGTTAATAGTAAT AAAAGAGTGTGTAAGAGAATTATTGGAATAGAGAATGATAAATTATATGTAAATGATTTT AATTCATTTGTTGAAGTTCCAAAAAATCATATATGGATAGAGGGAGATAATAAACAGGAT TCTTTTGATAGTAGAAATTATGGGTGTGTAAATATAAATTTGGTGATTGGAAAAATATTT TTTTTACTAGACCCATTTAGAAGTTTTTCTTTTATTACCAACAAAGGGAATTGTGGAATT GAACCAGATCGATTTGTGCACATGTCTAATTAG
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  • Fasta :-

    MNRFYHYTRNIYSSKCFKNDSFFYSKINLKFVSYNAKNGTHKYSAKINNAYAFRKNVNLK KINNFPKGIINMPYSCYRTYLLKKYGLTKRPEGYNTNITKNRIERYFNFAEIYHSLNFIK NVILSLLFIYGINNYVFDMTLTSGSSMYPLINKDGVILFYICDCSLRFFNELRNVAIYNY MNILYKIYNIIHGNFDNINFVKVKNTIANKIENLKNKIKSNQNVYKRGDVVLLISPVNSN KRVCKRIIGIENDKLYVNDFNSFVEVPKNHIWIEGDNKQDSFDSRNYGCVNINLVIGKIF FLLDPFRSFSFITNKGNCGIEPDRFVHMSN

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PCHAS_142050      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India