PCHAS_1427100 | trypsin-like serine protease, putative

_IDPredictionOTHERSPmTPCS_Position
PCHAS_1427100OTHER0.8969220.0519090.051169
No Results

  • Fasta :-

    >PCHAS_1427100 MKKSKFSLFKSVVKYSWRTSLFCYSTIFIHSSVNSLLNSYNDKEKCVYKHKRKNNFDLFA TISLKAIPISYCSCQPAYNWDNNVLPTETEYNNLELLKRVFFKLIQYEYFIIHKIIGCIN ESIIFVLYSLANFYLYFHSALFNICNILSKIYHGQGISGTLHTYPNIPYNIINSFVTIHK IYEHNKTPLKDDFKNDQLEYMGSGFIYDKRGHILTAAHNITNLEDKFVVKNSNGLYFATV LGLHKGSDVCVMKINSNEPLSYISLDTIRDDLRQGEPVVTYGQIQNFDKETYSVGIVNHP KQTFTKFENFNENGQTTLYPFIQISNPINKGMSGSPLLDQNGNLVGMIQKKIDNYGLALP ANILKNVAIHLQNKGVYKEPFLGIVFREKTLTIQNSKPLTKELKISSILANSPAAMGSLK KEDIISKMNNKDIENICDVHEILNSTSDGYINVDGIRNGKKFKTQIKLW
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_1427100.fa Sequence name : PCHAS_1427100 Sequence length : 469 VALUES OF COMPUTED PARAMETERS Coef20 : 4.621 CoefTot : 0.066 ChDiff : 13 ZoneTo : 41 KR : 6 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.276 1.829 0.262 0.663 MesoH : 0.341 0.741 -0.168 0.420 MuHd_075 : 33.580 22.453 9.200 7.377 MuHd_095 : 40.985 22.848 11.833 8.459 MuHd_100 : 31.149 18.774 10.423 7.048 MuHd_105 : 28.067 16.696 8.852 5.867 Hmax_075 : 17.000 17.900 2.121 6.230 Hmax_095 : 9.900 9.975 0.737 3.736 Hmax_100 : 5.000 8.500 3.898 2.740 Hmax_105 : 12.512 15.000 4.052 5.612 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0424 0.9576 DFMC : 0.0912 0.9088 This protein is probably imported in chloroplast. f(Ser) = 0.2439 f(Arg) = 0.0244 CMi = 2.34192 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 469 PCHAS_1427100 MKKSKFSLFKSVVKYSWRTSLFCYSTIFIHSSVNSLLNSYNDKEKCVYKHKRKNNFDLFATISLKAIPISYCSCQPAYNW 80 DNNVLPTETEYNNLELLKRVFFKLIQYEYFIIHKIIGCINESIIFVLYSLANFYLYFHSALFNICNILSKIYHGQGISGT 160 LHTYPNIPYNIINSFVTIHKIYEHNKTPLKDDFKNDQLEYMGSGFIYDKRGHILTAAHNITNLEDKFVVKNSNGLYFATV 240 LGLHKGSDVCVMKINSNEPLSYISLDTIRDDLRQGEPVVTYGQIQNFDKETYSVGIVNHPKQTFTKFENFNENGQTTLYP 320 FIQISNPINKGMSGSPLLDQNGNLVGMIQKKIDNYGLALPANILKNVAIHLQNKGVYKEPFLGIVFREKTLTIQNSKPLT 400 KELKISSILANSPAAMGSLKKEDIISKMNNKDIENICDVHEILNSTSDGYINVDGIRNGKKFKTQIKLW 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ..................................................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_1427100 2 -----MK|KS 0.063 . PCHAS_1427100 3 ----MKK|SK 0.151 . PCHAS_1427100 5 --MKKSK|FS 0.066 . PCHAS_1427100 10 SKFSLFK|SV 0.104 . PCHAS_1427100 14 LFKSVVK|YS 0.058 . PCHAS_1427100 18 VVKYSWR|TS 0.073 . PCHAS_1427100 43 LNSYNDK|EK 0.068 . PCHAS_1427100 45 SYNDKEK|CV 0.085 . PCHAS_1427100 49 KEKCVYK|HK 0.076 . PCHAS_1427100 51 KCVYKHK|RK 0.059 . PCHAS_1427100 52 CVYKHKR|KN 0.189 . PCHAS_1427100 53 VYKHKRK|NN 0.096 . PCHAS_1427100 65 FATISLK|AI 0.059 . PCHAS_1427100 98 NNLELLK|RV 0.071 . PCHAS_1427100 99 NLELLKR|VF 0.143 . PCHAS_1427100 103 LKRVFFK|LI 0.081 . PCHAS_1427100 114 EYFIIHK|II 0.068 . PCHAS_1427100 150 ICNILSK|IY 0.071 . PCHAS_1427100 180 SFVTIHK|IY 0.061 . PCHAS_1427100 186 KIYEHNK|TP 0.057 . PCHAS_1427100 190 HNKTPLK|DD 0.066 . PCHAS_1427100 194 PLKDDFK|ND 0.058 . PCHAS_1427100 209 SGFIYDK|RG 0.056 . PCHAS_1427100 210 GFIYDKR|GH 0.123 . PCHAS_1427100 226 ITNLEDK|FV 0.087 . PCHAS_1427100 230 EDKFVVK|NS 0.062 . PCHAS_1427100 245 TVLGLHK|GS 0.062 . PCHAS_1427100 253 SDVCVMK|IN 0.073 . PCHAS_1427100 269 ISLDTIR|DD 0.091 . PCHAS_1427100 273 TIRDDLR|QG 0.098 . PCHAS_1427100 289 QIQNFDK|ET 0.071 . PCHAS_1427100 301 GIVNHPK|QT 0.090 . PCHAS_1427100 306 PKQTFTK|FE 0.076 . PCHAS_1427100 330 ISNPINK|GM 0.076 . PCHAS_1427100 350 LVGMIQK|KI 0.067 . PCHAS_1427100 351 VGMIQKK|ID 0.106 . PCHAS_1427100 365 LPANILK|NV 0.081 . PCHAS_1427100 374 AIHLQNK|GV 0.092 . PCHAS_1427100 378 QNKGVYK|EP 0.067 . PCHAS_1427100 387 FLGIVFR|EK 0.088 . PCHAS_1427100 389 GIVFREK|TL 0.063 . PCHAS_1427100 397 LTIQNSK|PL 0.067 . PCHAS_1427100 401 NSKPLTK|EL 0.059 . PCHAS_1427100 404 PLTKELK|IS 0.062 . PCHAS_1427100 420 AAMGSLK|KE 0.065 . PCHAS_1427100 421 AMGSLKK|ED 0.086 . PCHAS_1427100 427 KEDIISK|MN 0.062 . PCHAS_1427100 431 ISKMNNK|DI 0.085 . PCHAS_1427100 457 INVDGIR|NG 0.075 . PCHAS_1427100 460 DGIRNGK|KF 0.110 . PCHAS_1427100 461 GIRNGKK|FK 0.137 . PCHAS_1427100 463 RNGKKFK|TQ 0.069 . PCHAS_1427100 467 KFKTQIK|LW 0.065 . ____________________________^_________________

  • Fasta :-

    >PCHAS_1427100 ATGAAAAAAAGCAAATTCTCGCTATTTAAAAGTGTAGTAAAATATTCTTGGCGAACATCT TTATTTTGTTATTCAACAATATTTATTCATAGTTCAGTGAATAGTCTATTAAATTCATAT AATGATAAAGAAAAGTGTGTATATAAACATAAAAGAAAAAATAACTTCGATTTGTTCGCC ACCATTTCATTAAAAGCCATTCCCATATCATATTGCAGTTGCCAACCTGCATATAATTGG GATAATAACGTATTACCTACTGAAACAGAATATAATAATTTAGAATTATTAAAGCGTGTG TTTTTTAAATTAATACAATATGAATATTTTATAATTCATAAAATAATTGGTTGTATTAAT GAGTCTATAATATTTGTTTTATATTCTTTAGCTAATTTTTATTTATATTTTCATAGCGCA TTATTTAACATATGTAATATATTAAGTAAAATATATCACGGTCAGGGTATTAGTGGCACG TTGCATACATATCCTAATATTCCTTATAACATTATTAACAGTTTTGTAACTATTCATAAA ATTTATGAACATAATAAAACACCATTAAAAGATGATTTTAAAAATGACCAATTGGAATAT ATGGGCTCCGGATTTATCTATGACAAAAGAGGACACATATTAACAGCTGCTCACAACATA ACCAATCTAGAAGACAAATTTGTTGTAAAAAATAGTAACGGCTTATACTTTGCAACTGTG CTTGGCTTGCATAAAGGATCTGACGTTTGCGTGATGAAAATTAATTCCAATGAACCACTT TCTTACATCTCTTTAGACACAATAAGAGATGATCTAAGGCAAGGGGAGCCTGTAGTTACA TATGGACAGATACAAAATTTTGATAAAGAAACATATAGTGTTGGTATAGTAAACCATCCA AAGCAAACATTTACAAAGTTTGAAAATTTTAATGAAAATGGACAGACTACCTTATATCCA TTTATTCAAATAAGCAACCCTATAAATAAAGGTATGTCTGGCTCACCACTACTAGATCAG AATGGGAACCTTGTAGGAATGATACAAAAAAAAATCGACAATTATGGATTGGCTTTACCT GCGAATATTCTAAAAAATGTAGCTATTCATTTACAAAATAAGGGAGTATATAAAGAACCA TTTTTAGGTATTGTATTTAGAGAGAAGACTCTCACAATTCAAAATTCCAAACCTCTTACA AAAGAGTTGAAAATTTCCAGTATTTTAGCCAATTCACCAGCCGCTATGGGCAGCTTGAAA AAGGAAGATATAATTTCAAAGATGAACAATAAAGACATAGAAAATATTTGTGATGTACAT GAAATTCTCAATAGTACAAGCGATGGATATATAAATGTTGATGGCATTCGAAATGGCAAA AAATTTAAAACACAGATAAAACTATGGTGA
  • Download Fasta

  • Fasta :-

    MKKSKFSLFKSVVKYSWRTSLFCYSTIFIHSSVNSLLNSYNDKEKCVYKHKRKNNFDLFA TISLKAIPISYCSCQPAYNWDNNVLPTETEYNNLELLKRVFFKLIQYEYFIIHKIIGCIN ESIIFVLYSLANFYLYFHSALFNICNILSKIYHGQGISGTLHTYPNIPYNIINSFVTIHK IYEHNKTPLKDDFKNDQLEYMGSGFIYDKRGHILTAAHNITNLEDKFVVKNSNGLYFATV LGLHKGSDVCVMKINSNEPLSYISLDTIRDDLRQGEPVVTYGQIQNFDKETYSVGIVNHP KQTFTKFENFNENGQTTLYPFIQISNPINKGMSGSPLLDQNGNLVGMIQKKIDNYGLALP ANILKNVAIHLQNKGVYKEPFLGIVFREKTLTIQNSKPLTKELKISSILANSPAAMGSLK KEDIISKMNNKDIENICDVHEILNSTSDGYINVDGIRNGKKFKTQIKLW

  • title: protein binding site
  • coordinates: F381,L382,G383,I384,F386,N435,I436,V439,H440
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PCHAS_142710      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India