PCHAS_1443600 | ataxin-3, putative

_IDPredictionOTHERSPmTPCS_Position
PCHAS_1443600OTHER0.9999040.0000210.000075
No Results

  • Fasta :-

    >PCHAS_1443600 MSKKYVYWEKQGNDRMCGLHCINSILQGPYYSEDTLAKIGKEIDEKEKEFLKMPSNELIR TNSSNVLDDGFINISVLIESLRRKNILLKNAFEEDLTKIISSGHQDIGYICNLEQHWFSV RKIHNTWYVLDSLKSAPLFIKDINLKYYFNDIFKKYHIFSVQNMNPYISLPKPDINFEPK NPNQFYIPTNHISEISSVSNGFILEDKYSMNKSENSSLFSNFNKPQNFQWPKNGGRKLND DINNINANNMDDDGDDEFKIALRLSMEEYIKNLPPPPSEELINEDFINVMIKLPNKKIQR KFGVSKTLADIFYWIEYESVNNQQIDSSLVFKSCYFLYQLFPRRKFCKYQNGSIELQAGD KVELVHDKTLNDMKFEKEETFMMQ
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_1443600.fa Sequence name : PCHAS_1443600 Sequence length : 384 VALUES OF COMPUTED PARAMETERS Coef20 : 3.191 CoefTot : -0.428 ChDiff : -5 ZoneTo : 8 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.524 0.976 -0.012 0.407 MesoH : -1.087 -0.000 -0.613 0.131 MuHd_075 : 35.718 16.404 9.563 5.130 MuHd_095 : 26.863 12.810 6.670 5.126 MuHd_100 : 25.275 12.161 6.055 4.501 MuHd_105 : 17.747 8.659 4.075 3.105 Hmax_075 : 7.175 3.938 0.560 2.083 Hmax_095 : -1.487 1.225 -1.869 1.400 Hmax_100 : 1.400 -0.500 -2.272 1.910 Hmax_105 : -1.517 0.117 -2.252 1.820 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8610 0.1390 DFMC : 0.8236 0.1764
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 384 PCHAS_1443600 MSKKYVYWEKQGNDRMCGLHCINSILQGPYYSEDTLAKIGKEIDEKEKEFLKMPSNELIRTNSSNVLDDGFINISVLIES 80 LRRKNILLKNAFEEDLTKIISSGHQDIGYICNLEQHWFSVRKIHNTWYVLDSLKSAPLFIKDINLKYYFNDIFKKYHIFS 160 VQNMNPYISLPKPDINFEPKNPNQFYIPTNHISEISSVSNGFILEDKYSMNKSENSSLFSNFNKPQNFQWPKNGGRKLND 240 DINNINANNMDDDGDDEFKIALRLSMEEYIKNLPPPPSEELINEDFINVMIKLPNKKIQRKFGVSKTLADIFYWIEYESV 320 NNQQIDSSLVFKSCYFLYQLFPRRKFCKYQNGSIELQAGDKVELVHDKTLNDMKFEKEETFMMQ 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................ 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_1443600 3 ----MSK|KY 0.062 . PCHAS_1443600 4 ---MSKK|YV 0.179 . PCHAS_1443600 10 KYVYWEK|QG 0.066 . PCHAS_1443600 15 EKQGNDR|MC 0.088 . PCHAS_1443600 38 SEDTLAK|IG 0.061 . PCHAS_1443600 41 TLAKIGK|EI 0.110 . PCHAS_1443600 46 GKEIDEK|EK 0.058 . PCHAS_1443600 48 EIDEKEK|EF 0.058 . PCHAS_1443600 52 KEKEFLK|MP 0.062 . PCHAS_1443600 60 PSNELIR|TN 0.083 . PCHAS_1443600 82 VLIESLR|RK 0.076 . PCHAS_1443600 83 LIESLRR|KN 0.084 . PCHAS_1443600 84 IESLRRK|NI 0.082 . PCHAS_1443600 89 RKNILLK|NA 0.074 . PCHAS_1443600 98 FEEDLTK|II 0.068 . PCHAS_1443600 121 QHWFSVR|KI 0.085 . PCHAS_1443600 122 HWFSVRK|IH 0.076 . PCHAS_1443600 134 YVLDSLK|SA 0.068 . PCHAS_1443600 141 SAPLFIK|DI 0.067 . PCHAS_1443600 146 IKDINLK|YY 0.062 . PCHAS_1443600 154 YFNDIFK|KY 0.061 . PCHAS_1443600 155 FNDIFKK|YH 0.098 . PCHAS_1443600 172 PYISLPK|PD 0.059 . PCHAS_1443600 180 DINFEPK|NP 0.062 . PCHAS_1443600 207 GFILEDK|YS 0.065 . PCHAS_1443600 212 DKYSMNK|SE 0.071 . PCHAS_1443600 224 LFSNFNK|PQ 0.066 . PCHAS_1443600 232 QNFQWPK|NG 0.073 . PCHAS_1443600 236 WPKNGGR|KL 0.095 . PCHAS_1443600 237 PKNGGRK|LN 0.094 . PCHAS_1443600 259 DGDDEFK|IA 0.057 . PCHAS_1443600 263 EFKIALR|LS 0.066 . PCHAS_1443600 271 SMEEYIK|NL 0.056 . PCHAS_1443600 292 FINVMIK|LP 0.066 . PCHAS_1443600 296 MIKLPNK|KI 0.064 . PCHAS_1443600 297 IKLPNKK|IQ 0.091 . PCHAS_1443600 300 PNKKIQR|KF 0.111 . PCHAS_1443600 301 NKKIQRK|FG 0.084 . PCHAS_1443600 306 RKFGVSK|TL 0.079 . PCHAS_1443600 332 DSSLVFK|SC 0.085 . PCHAS_1443600 343 LYQLFPR|RK 0.082 . PCHAS_1443600 344 YQLFPRR|KF 0.132 . PCHAS_1443600 345 QLFPRRK|FC 0.089 . PCHAS_1443600 348 PRRKFCK|YQ 0.090 . PCHAS_1443600 361 ELQAGDK|VE 0.055 . PCHAS_1443600 368 VELVHDK|TL 0.065 . PCHAS_1443600 374 KTLNDMK|FE 0.068 . PCHAS_1443600 377 NDMKFEK|EE 0.063 . ____________________________^_________________

  • Fasta :-

    >PCHAS_1443600 ATGAGTAAGAAATATGTATATTGGGAAAAGCAGGGTAATGATCGTATGTGTGGTCTTCAC TGCATAAATAGTATCCTTCAGGGCCCTTATTATAGTGAAGATACTCTGGCAAAAATAGGA AAAGAAATTGATGAAAAAGAAAAAGAATTTTTAAAAATGCCTTCTAACGAGTTAATAAGA ACCAATTCATCAAATGTTTTGGATGACGGTTTTATAAATATTTCTGTGCTCATTGAAAGT TTACGGAGAAAAAATATATTATTAAAAAATGCTTTTGAAGAAGATTTAACAAAAATAATA TCAAGCGGTCATCAAGATATTGGCTATATATGTAATTTAGAACAGCATTGGTTTAGTGTT CGTAAAATTCATAATACTTGGTATGTATTAGATAGTTTAAAAAGTGCACCATTATTTATT AAAGATATAAATTTAAAATATTATTTTAATGACATTTTTAAAAAATATCATATATTTTCT GTACAAAATATGAACCCATATATTTCTTTACCAAAACCTGATATAAATTTTGAACCTAAA AATCCAAATCAATTTTATATACCAACTAATCATATTTCTGAAATCTCATCTGTCTCTAAT GGTTTTATATTAGAAGATAAATATAGTATGAACAAGTCAGAAAATAGTAGTCTCTTTTCA AATTTTAATAAGCCTCAAAATTTTCAATGGCCAAAAAATGGAGGAAGAAAATTAAACGAT GATATAAATAATATTAACGCAAATAATATGGATGATGATGGTGACGATGAATTTAAAATT GCTTTGAGATTATCAATGGAAGAATATATTAAGAATTTGCCACCTCCACCAAGCGAAGAA TTAATTAATGAAGATTTCATAAATGTTATGATCAAATTACCAAACAAAAAAATCCAAAGA AAATTTGGCGTATCAAAAACTTTAGCGGACATTTTTTATTGGATAGAATATGAATCAGTA AACAACCAACAGATAGACTCATCACTAGTTTTTAAAAGTTGCTATTTTCTTTATCAATTA TTCCCAAGGAGAAAGTTTTGCAAGTATCAAAATGGATCTATCGAATTACAAGCTGGTGAC AAGGTTGAATTGGTTCATGATAAAACTTTGAATGATATGAAATTCGAAAAAGAGGAAACA TTTATGATGCAATAA
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  • Fasta :-

    MSKKYVYWEKQGNDRMCGLHCINSILQGPYYSEDTLAKIGKEIDEKEKEFLKMPSNELIR TNSSNVLDDGFINISVLIESLRRKNILLKNAFEEDLTKIISSGHQDIGYICNLEQHWFSV RKIHNTWYVLDSLKSAPLFIKDINLKYYFNDIFKKYHIFSVQNMNPYISLPKPDINFEPK NPNQFYIPTNHISEISSVSNGFILEDKYSMNKSENSSLFSNFNKPQNFQWPKNGGRKLND DINNINANNMDDDGDDEFKIALRLSMEEYIKNLPPPPSEELINEDFINVMIKLPNKKIQR KFGVSKTLADIFYWIEYESVNNQQIDSSLVFKSCYFLYQLFPRRKFCKYQNGSIELQAGD KVELVHDKTLNDMKFEKEETFMMQ

    No Results
No Results
No Results
IDSitePeptideScoreMethod
PCHAS_1443600265 SALRLSMEEY0.998unsp

PCHAS_144360      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India