PCHAS_1447300 | ATP-dependent protease subunit ClpQ, putative

_IDPredictionOTHERSPmTPCS_Position
PCHAS_1447300mTP0.3135060.0001480.686346CS pos: 24-25. RSY-FS. Pr: 0.4217
No Results

  • Fasta :-

    >PCHAS_1447300 MFFKSLSNIVKPRKQITTAIQRSYFSDSGKIVIPRHGTTILCVRKNNEVCLIGDGMVSQG TMIVKGNAKKIRRLKDNILMGFAGATADCFTLLDKFETKIDEYPNQLLRSCVELAKLWRT DRYLRHLEAVLIVADKDTLLEVTGNGDVLEPSGNVLGTGSGGPYAIAAARALYDIENLSA KDIAYKAMNIAADMCCHTNHNFICETL
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_1447300.fa Sequence name : PCHAS_1447300 Sequence length : 207 VALUES OF COMPUTED PARAMETERS Coef20 : 4.462 CoefTot : -1.432 ChDiff : 4 ZoneTo : 47 KR : 9 DE : 1 CleavSite : 37 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.147 1.300 0.135 0.534 MesoH : -0.728 0.288 -0.366 0.218 MuHd_075 : 43.293 21.474 12.960 8.556 MuHd_095 : 29.429 20.610 9.144 7.948 MuHd_100 : 29.659 26.637 10.660 8.338 MuHd_105 : 33.164 31.600 12.980 9.022 Hmax_075 : 14.117 16.100 4.856 4.538 Hmax_095 : 6.900 7.787 0.511 3.380 Hmax_100 : 6.500 16.300 1.425 3.980 Hmax_105 : 12.833 19.833 2.639 5.203 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1056 0.8944 DFMC : 0.0831 0.9169 This protein is probably imported in mitochondria. f(Ser) = 0.1064 f(Arg) = 0.0851 CMi = 0.56243 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 207 PCHAS_1447300 MFFKSLSNIVKPRKQITTAIQRSYFSDSGKIVIPRHGTTILCVRKNNEVCLIGDGMVSQGTMIVKGNAKKIRRLKDNILM 80 GFAGATADCFTLLDKFETKIDEYPNQLLRSCVELAKLWRTDRYLRHLEAVLIVADKDTLLEVTGNGDVLEPSGNVLGTGS 160 GGPYAIAAARALYDIENLSAKDIAYKAMNIAADMCCHTNHNFICETL 240 ................................................................................ 80 ................................................................................ 160 ............................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_1447300 4 ---MFFK|SL 0.097 . PCHAS_1447300 11 SLSNIVK|PR 0.076 . PCHAS_1447300 13 SNIVKPR|KQ 0.108 . PCHAS_1447300 14 NIVKPRK|QI 0.097 . PCHAS_1447300 22 ITTAIQR|SY 0.082 . PCHAS_1447300 30 YFSDSGK|IV 0.092 . PCHAS_1447300 35 GKIVIPR|HG 0.111 . PCHAS_1447300 44 TTILCVR|KN 0.077 . PCHAS_1447300 45 TILCVRK|NN 0.087 . PCHAS_1447300 65 QGTMIVK|GN 0.066 . PCHAS_1447300 69 IVKGNAK|KI 0.065 . PCHAS_1447300 70 VKGNAKK|IR 0.080 . PCHAS_1447300 72 GNAKKIR|RL 0.152 . PCHAS_1447300 73 NAKKIRR|LK 0.171 . PCHAS_1447300 75 KKIRRLK|DN 0.167 . PCHAS_1447300 95 CFTLLDK|FE 0.058 . PCHAS_1447300 99 LDKFETK|ID 0.060 . PCHAS_1447300 109 YPNQLLR|SC 0.099 . PCHAS_1447300 116 SCVELAK|LW 0.062 . PCHAS_1447300 119 ELAKLWR|TD 0.085 . PCHAS_1447300 122 KLWRTDR|YL 0.320 . PCHAS_1447300 125 RTDRYLR|HL 0.285 . PCHAS_1447300 136 VLIVADK|DT 0.066 . PCHAS_1447300 170 YAIAAAR|AL 0.129 . PCHAS_1447300 181 IENLSAK|DI 0.088 . PCHAS_1447300 186 AKDIAYK|AM 0.067 . ____________________________^_________________

  • Fasta :-

    >PCHAS_1447300 ATGTTTTTTAAATCCCTTTCAAATATAGTTAAACCGCGAAAACAAATAACCACAGCAATT CAAAGAAGCTACTTTTCTGATAGTGGAAAGATTGTGATACCGCGACATGGAACTACGATA TTATGCGTGCGCAAAAACAATGAAGTGTGTTTAATCGGTGATGGCATGGTTTCCCAAGGA ACAATGATAGTTAAAGGAAACGCAAAAAAAATAAGAAGGCTAAAAGATAACATTTTAATG GGCTTCGCAGGCGCTACAGCAGATTGTTTTACCTTATTAGACAAATTTGAAACAAAAATT GACGAATACCCAAATCAACTTCTGAGAAGCTGTGTTGAACTAGCCAAATTGTGGCGAACT GATAGATATTTACGTCATTTGGAAGCAGTATTAATAGTGGCTGACAAGGACACTTTATTA GAGGTAACCGGAAATGGTGATGTTTTAGAACCATCTGGAAATGTTTTAGGGACAGGATCG GGAGGCCCATATGCAATAGCAGCTGCAAGAGCTTTATACGATATCGAAAATTTATCTGCT AAGGACATTGCTTATAAAGCTATGAATATTGCCGCTGATATGTGCTGTCACACGAATCAT AACTTTATATGCGAAACGTTGTAG
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  • Fasta :-

    MFFKSLSNIVKPRKQITTAIQRSYFSDSGKIVIPRHGTTILCVRKNNEVCLIGDGMVSQG TMIVKGNAKKIRRLKDNILMGFAGATADCFTLLDKFETKIDEYPNQLLRSCVELAKLWRT DRYLRHLEAVLIVADKDTLLEVTGNGDVLEPSGNVLGTGSGGPYAIAAARALYDIENLSA KDIAYKAMNIAADMCCHTNHNFICETL

  • title: active site
  • coordinates: T38,D54,M56,K70,S160
No Results
No Results
IDSitePeptideScoreMethod
PCHAS_1447300179 SIENLSAKDI0.996unsp

PCHAS_144730      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India