PF3D7_0307400 | ATP-dependent Clp protease proteolytic subunit

UniProt_ID: O97252

Computed_GO_Component_IDs:
Computed_GO_Components:
Computed_GO_Function_IDs: GO:0004252
Computed_GO_Functions: serine-type endopeptidase activity
Computed_GO_Process_IDs:
Computed_GO_Processes:
Curated_GO_Component_IDs: GO:0020011 GO:0009368
Curated_GO_Components: apicoplast endopeptidase Clp complex
Curated_GO_Function_IDs: GO:0004176 GO:0016787
Curated_GO_Functions: ATP-dependent peptidase activity hydrolase activity
Curated_GO_Processes: proteolysis response to drug

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	PF3D7_0307400	SP	0.134125	0.864012	0.001863	CS pos: 20-21. IQT-KK. Pr: 0.9358

No Results

Fasta :-
>PF3D7_0307400 MIYLFLFLFLILLKNKKIQTKKSIKNSNILTFIPLSKKNEIVKENIGKLLTYNLQYDQGY TNYNKKVRKINVHNSSSEFANNINLDIEKQNNERAILKKEDLNFQIKNDCISKDNINKKK IKNMHNKDQGMIQHTNTNDNIDYTNSNYNNYLNYDVKKKKNKKRKYSKVQQQIITNNDDI KDMKKDVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNINHNDIKIYINSPGGSINEG LAILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQ DIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDRDYYMNALEAKQYGIIDEVIETKL PHPYFNKVEK
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PF3D7_0307400.fa Sequence name : PF3D7_0307400 Sequence length : 370 VALUES OF COMPUTED PARAMETERS Coef20 : 4.442 CoefTot : -0.693 ChDiff : 19 ZoneTo : 39 KR : 8 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.971 1.829 0.343 0.655 MesoH : -0.494 0.411 -0.358 0.274 MuHd_075 : 32.854 22.128 11.068 7.903 MuHd_095 : 28.886 10.277 8.328 3.881 MuHd_100 : 22.763 11.620 6.253 3.566 MuHd_105 : 21.538 10.771 6.882 3.509 Hmax_075 : 4.700 10.200 -0.037 3.790 Hmax_095 : 9.300 9.500 0.739 3.649 Hmax_100 : 5.400 9.500 -1.100 3.070 Hmax_105 : -8.400 5.600 1.001 5.860 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.4566 0.5434 DFMC : 0.2582 0.7418 This protein is probably imported in chloroplast. f(Ser) = 0.0769 f(Arg) = 0.0000 CMi = 1.09890 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 370 PF3D7_0307400 MIYLFLFLFLILLKNKKIQTKKSIKNSNILTFIPLSKKNEIVKENIGKLLTYNLQYDQGYTNYNKKVRKINVHNSSSEFA 80 NNINLDIEKQNNERAILKKEDLNFQIKNDCISKDNINKKKIKNMHNKDQGMIQHTNTNDNIDYTNSNYNNYLNYDVKKKK 160 NKKRKYSKVQQQIITNNDDIKDMKKDVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNINHNDIKIYINSPGGSINEG 240 LAILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYL 320 SSFTNQTVETIEKDSDRDYYMNALEAKQYGIIDEVIETKLPHPYFNKVEK 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .................................................. 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PF3D7_0307400 14 LFLILLK|NK 0.052 . PF3D7_0307400 16 LILLKNK|KI 0.061 . PF3D7_0307400 17 ILLKNKK|IQ 0.075 . PF3D7_0307400 21 NKKIQTK|KS 0.066 . PF3D7_0307400 22 KKIQTKK|SI 0.165 . PF3D7_0307400 25 QTKKSIK|NS 0.060 . PF3D7_0307400 37 TFIPLSK|KN 0.069 . PF3D7_0307400 38 FIPLSKK|NE 0.080 . PF3D7_0307400 43 KKNEIVK|EN 0.074 . PF3D7_0307400 48 VKENIGK|LL 0.064 . PF3D7_0307400 65 GYTNYNK|KV 0.071 . PF3D7_0307400 66 YTNYNKK|VR 0.087 . PF3D7_0307400 68 NYNKKVR|KI 0.113 . PF3D7_0307400 69 YNKKVRK|IN 0.089 . PF3D7_0307400 89 INLDIEK|QN 0.056 . PF3D7_0307400 94 EKQNNER|AI 0.102 . PF3D7_0307400 98 NERAILK|KE 0.058 . PF3D7_0307400 99 ERAILKK|ED 0.089 . PF3D7_0307400 107 DLNFQIK|ND 0.066 . PF3D7_0307400 113 KNDCISK|DN 0.066 . PF3D7_0307400 118 SKDNINK|KK 0.065 . PF3D7_0307400 119 KDNINKK|KI 0.110 . PF3D7_0307400 120 DNINKKK|IK 0.110 . PF3D7_0307400 122 INKKKIK|NM 0.075 . PF3D7_0307400 127 IKNMHNK|DQ 0.151 . PF3D7_0307400 157 YLNYDVK|KK 0.061 . PF3D7_0307400 158 LNYDVKK|KK 0.119 . PF3D7_0307400 159 NYDVKKK|KN 0.087 . PF3D7_0307400 160 YDVKKKK|NK 0.100 . PF3D7_0307400 162 VKKKKNK|KR 0.067 . PF3D7_0307400 163 KKKKNKK|RK 0.098 . PF3D7_0307400 164 KKKNKKR|KY 0.446 . PF3D7_0307400 165 KKNKKRK|YS 0.203 . PF3D7_0307400 168 KKRKYSK|VQ 0.073 . PF3D7_0307400 181 TNNDDIK|DM 0.078 . PF3D7_0307400 184 DDIKDMK|KD 0.058 . PF3D7_0307400 185 DIKDMKK|DV 0.122 . PF3D7_0307400 188 DMKKDVK|LF 0.060 . PF3D7_0307400 193 VKLFFFK|KR 0.062 . PF3D7_0307400 194 KLFFFKK|RI 0.095 . PF3D7_0307400 195 LFFFKKR|II 0.166 . PF3D7_0307400 205 LTDEINK|KT 0.061 . PF3D7_0307400 206 TDEINKK|TA 0.129 . PF3D7_0307400 227 INHNDIK|IY 0.070 . PF3D7_0307400 251 DIFNYIK|SD 0.072 . PF3D7_0307400 274 VILASGK|KG 0.055 . PF3D7_0307400 275 ILASGKK|GK 0.121 . PF3D7_0307400 277 ASGKKGK|RK 0.064 . PF3D7_0307400 278 SGKKGKR|KS 0.124 . PF3D7_0307400 279 GKKGKRK|SL 0.168 . PF3D7_0307400 285 KSLPNCR|IM 0.080 . PF3D7_0307400 307 DIEIQTK|EI 0.059 . PF3D7_0307400 313 KEILYLK|KL 0.053 . PF3D7_0307400 314 EILYLKK|LL 0.103 . PF3D7_0307400 333 TVETIEK|DS 0.066 . PF3D7_0307400 337 IEKDSDR|DY 0.103 . PF3D7_0307400 347 MNALEAK|QY 0.090 . PF3D7_0307400 359 DEVIETK|LP 0.060 . PF3D7_0307400 367 PHPYFNK|VE 0.056 . PF3D7_0307400 370 YFNKVEK|-- 0.076 . ____________________________^_________________

Fasta :-
>PF3D7_0307400 ATGATATATTTATTCTTATTCCTATTTTTGATCTTATTAAAAAATAAGAAAATACAAACT AAAAAAAGTATAAAGAACTCGAATATTTTAACATTCATACCATTATCCAAAAAAAATGAA ATTGTTAAAGAAAACATAGGGAAACTATTAACGTATAATTTACAATATGATCAAGGATAT ACAAACTATAATAAAAAGGTAAGAAAAATAAACGTACATAATAGCTCATCAGAATTCGCA AATAATATTAACCTAGATATCGAAAAGCAAAATAATGAAAGAGCCATTTTAAAAAAAGAA GATTTAAATTTTCAAATAAAAAATGACTGTATATCAAAGGATAACATAAATAAAAAAAAA ATAAAAAATATGCATAATAAAGATCAAGGAATGATACAACATACCAATACTAATGATAAT ATTGATTACACCAATAGTAACTATAATAATTATCTTAATTATGATGTTAAAAAAAAAAAA AATAAAAAAAGGAAATATTCAAAAGTCCAACAACAGATTATCACGAATAATGATGATATT AAAGACATGAAAAAAGATGTCAAATTATTTTTTTTTAAAAAAAGAATTATATATTTAACA GATGAAATAAATAAAAAAACAGCAGATGAACTTATTAGTCAATTATTATATTTAGATAAT ATAAATCATAATGATATTAAAATATATATTAATTCACCAGGAGGTTCCATAAATGAGGGA CTAGCCATTCTAGATATATTTAATTATATTAAATCAGATATACAAACAATATCATTTGGT TTAGTTGCATCTATGGCATCAGTGATTTTAGCTAGTGGAAAAAAAGGAAAAAGAAAGTCT TTACCTAATTGTAGAATCATGATACATCAACCTCTTGGTAACGCTTTTGGTCATCCACAA GATATTGAAATACAAACAAAAGAAATCCTTTATCTTAAAAAACTTCTATATCATTATCTA TCATCATTTACCAATCAGACAGTCGAAACGATTGAAAAGGATTCTGATAGAGATTATTAT ATGAATGCACTAGAAGCAAAACAATATGGAATCATAGATGAAGTTATTGAAACTAAATTA CCACATCCATATTTTAATAAAGTAGAAAAATAA
Download Fasta

Fasta :-

MIYLFLFLFLILLKNKKIQTKKSIKNSNILTFIPLSKKNEIVKENIGKLLTYNLQYDQGY TNYNKKVRKINVHNSSSEFANNINLDIEKQNNERAILKKEDLNFQIKNDCISKDNINKKK IKNMHNKDQGMIQHTNTNDNIDYTNSNYNNYLNYDVKKKKNKKRKYSKVQQQIITNNDDI KDMKKDVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNINHNDIKIYINSPGGSINEG LAILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQ DIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDRDYYMNALEAKQYGIIDEVIETKL PHPYFNKVEK